selected publications
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academic article
- Nowland SJSilva CNSSouthgate PCStrugnell JM. Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics. 20:711. 2019
- Silva CNSVillacorta-Rath CWoodings LNMurphy NPGreen BSHartmann KGardner CBell JJStrugnell JM. Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics. Reviews in Fish Biology and Fisheries. 29:669-687. 2019
- Caruana NJStrugnell JMFaou PFinn JCooke IR. Comparative Proteomic Analysis of Slime from the Striped Pyjama Squid, Sepioloidea lineolata, and the Southern Bottletail Squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae). Journal of Proteome Research. 18:890-899. 2019
- Woodings LNMurphy NPJeffs ASuthers IMLiggins GWStrugnell JM. Distribution of Palinuridae and Scyllaridae phyllosoma larvae within the East Australian Current: a climate change hot spot. Marine and Freshwater Research. 70:1020-1033. 2019
- Roura AAmor MGonzalez AFGuerra ABarton EDStrugnell JM. Oceanographic processes shape genetic signatures of planktonic cephalopod paralarvae in two upwelling regions. Progress in Oceanography. 170:11-27. 2019
- Whitelaw BLCooke IRFinn JZenger KStrugnell JM. The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena). Aquatic Toxicology. 206:114-122. 2019
- Hill ELinacre AToop SMurphy NStrugnell J. Widespread hybridization in the introduced hog deer population of Victoria, Australia, and its implications for conservation. Ecology and Evolution. 2019
- Bolstad KSRBraid HEStrugnell JMLindgren ARLischka AKubodera TLaptikhovsky VLRoura Labiaga A. A mitochondrial phylogeny of the family Onychoteuthidae Gray, 1847 (Cephalopoda: Oegopsida). Molecular Phylogenetics and Evolution. 128:88-97. 2018
- Reid ALStrugnell JM. A new pygmy squid, Idiosepius hallami n. sp (Cephalopoda: Idiosepiidae) from eastern Australia and elevation of the southern endemic 'notoides' clade to a new genus, Xipholeptos n. gen.. Zootaxa. 4369:451-486. 2018
- Gutt JIsla EBertler ANBodeker GEBracegirdle TJCavanagh RDComiso JCConvey PCummings VDe Conto RDe Master Ddi Prisco Gd'Ovidio FGriffiths HJKhan ALLópez-Martínez JMurray AENielsen UNOtt SPost ARopert-Coudert YSaucède TScherer RSchiaparelli SSchloss IRSmith CRStefels JStevens CStrugnell JTrimborn SVerde CVerleyen EWall DHWilson NGXavier JC. Cross-disciplinarity in the advance of Antarctic ecosystem research. Marine Genomics. 37:1-17. 2018
- Strugnell JMPedro JBWilson NG. Dating Antarctic ice sheet collapse: Proposing a molecular genetic approach. Quaternary Science Reviews. 179:153-157. 2018
- Dos Anjos De Souza CMurphy NStrugnell JM. De novo transcriptome assembly and functional annotation of the southern rock lobster ( Jasus edwardsii ). Marine Genomics. 42:58-62. 2018
- Sanchez GSetiamarga DHETuanapaya STongtherm KWinkelmann IESchmidbaur HUmino TAlbertin CAllcock LPerales-Raya CGleadall IStrugnell JMSimakov ONabhitabhata J. Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas. PeerJ. 6:1-19. 2018
- Bonebrake TCBrown CJBell JDBlanchard JLChauvenet AChampion CChen I-CClark TDColwell RKDanielsen FDell AIDonelson JMEvengård BFerrier SFrusher SGarcia RAGriffis RBHobday AJJarzyna MALee ELenoir JLinnetved HMartin VYMcCormack PCMcDonald JMcDonald-Madden EMitchell NMustonen TPandolfi JMPettorelli NPossingham HPulsifer PReynolds MScheffers BRSorte CJBStrugnell JMTuanmu M-NTwiname SVergés AVillanueva CWapstra EWernberg TPecl GT. Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science. Biological Reviews. 93:284-305. 2018
- Woodings LNMurphy NPDoyle SRHall NERobinson AJLiggins GWGreen BSCooke IRBell JJStrugnell JM. Outlier SNPs detect weak regional structure against a background of genetic homogeneity in the Eastern Rock Lobster, Sagmariasus verreauxi. Marine Biology: international journal on life in oceans and coastal waters. 165:1-17. 2018
- Ramos JEPecl GTMoltschaniwskyj NASemmens JMDos Anjos De Souza CStrugnell JM. Population genetic signatures of a climate change driven marine range extension. Scientific Reports. 8:1-12. 2018
- Fingerhut LCHWStrugnell JMFaou PRoura Labiaga AZhang JCooke IR. Shotgun Proteomics Analysis of Saliva and Salivary Gland Tissue from the Common Octopus Octopus vulgaris. Journal of Proteome Research. 17:3866-3876. 2018
- Villacorta-Rath CSouza CAMurphy NPGreen BSGardner CStrugnell JM. Temporal genetic patterns of diversity and structure evidence chaotic genetic patchiness in a spiny lobster. Molecular Ecology. 27:54-65. 2018
- Pecl GTAraújo MBBell JDBlanchard JBonebrake TCChen I-CClark TDColwell RKDanielsen FEvengård BFalconi LFerrier SFrusher SGarcia RAGriffis RBHobday AJJanion-Scheepers CJarzyna MAJennings SLenoir JLinnetved HIMartin VYMcCormack PCMcDonald JMitchell NJMustonen TPandolfi JMPettorelli NPopova ERobinson SAScheffers BRShaw JDSorte CJBStrugnell JMSunday JMTuanmu M-NVergés AVillanueva CWernberg TWapstra EWilliams SE. Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being. Science. 355:1-10. 2017
- Strugnell JMAllcock ALWatts PC. Closely related octopus species show different spatial genetic structures in response to the Antarctic seascape. Ecology and Evolution. 7:8087-8099. 2017
- Dos Anjos De Souza CMurphy NVillacorta-Rath CWoodings LNIlyushkina IHernandez CEGreen BSBell JJStrugnell JM. Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports. 7:1-14. 2017
- Shiel BPHall NECooke IRRobinson NAStrugnell JM. Epipodial Tentacle Gene Expression and Predetermined Resilience to Summer Mortality in the Commercially Important Greenlip Abalone, Haliotis laevigata. Marine Biotechnology. 19:191-205. 2017
- Amor MDLaptikhovsky VNorman MDStrugnell JM. Genetic evidence extends the known distribution of Octopus insularis to the mid-Atlantic islands Ascension and St Helena. The Journal of the Marine Biological Association of the United Kingdom. 97:753-758. 2017
- Amor MDNorman MDRoura Labiaga ALeite TSGleadall IGReid APerales-Raya CLu C-CSilvey CJVidal EAGHochberg FGZheng XStrugnell JM. Morphological assessment of the Octopus vulgaris species complex evaluated in light of molecular-based phylogenetic inferences. Zoologica Scripta. 46:275-288. 2017
- Shiel BPHall NCooke IRRobinson NAStone DAJStrugnell JM. The effect of commercial, natural and grape seed extract supplemented diets on gene expression signatures and survival of greenlip abalone ( Haliotis laevigata ) during heat stress. Aquaculture. 479:798-807. 2017
- Strugnell JHall NVecchione MFuchs DAllcock AL. Whole mitochondrial genome of the Ram’s Horn Squid shines light on the phylogenetic position of the monotypic order Spirulida (Haeckel, 1896). Molecular Phylogenetics and Evolution. 109:296-301. 2017
- Roura Labiaga ADoyle SRNande MStrugnell JM. You are what you eat: a genomic analysis of the gut microbiome of captive and wild octopus vulgaris paralarvae and their zooplankton prey. Frontiers in Physiology. 8:1-14. 2017
- Caruana NJCooke IRFaou PFinn JHall NENorman MPineda SSStrugnell JM. A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda). Journal of Proteomics. 148:170-182. 2016
- Whitelaw BLStrugnell JMFaou Pda Fonseca RRHall NENorman MFinn JCooke IR. Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus. Journal of Proteome Research. 15:3284-3297. 2016
- Villacorta-Rath CIlyushkina IStrugnell JMGreen BSMurphy NPDoyle SRHall NERobinson AJBell JJ. Outlier SNPs enable food traceability of the southern rock lobster, Jasus edwardsii. Marine Biology: international journal on life in oceans and coastal waters. 163. 2016
- Robinson NAHall NERoss EMCooke IRShiel BPRobinson AJStrugnell JM. The complete mitochondrial genome of Haliotis laevigata ( Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis. 27:437-438. 2016
- Hall NEHanzak JAllcock ALCooke IROgura AStrugnell JM. The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis. 27:5-6. 2016
- Oellermann MStrugnell JMLieb BMark FC. Erratum to: Positive selection in octopus haemocyanin indicates functional links to temperature adaptation. BMC Evolutionary Biology. 15. 2015
- Bolstad KSRPerez JAAStrugnell JMVidal EAG. Cranchiids of the South Atlantic Mid-Oceanic Ridge: results from the first southern MAR-ECO expedition. Journal of Natural History. 49:1351-1371. 2015
- Shiel BPHall NECooke IRRobinson NAStrugnell JM. De Novo Characterisation of the Greenlip Abalone Transcriptome (Haliotis laevigata) with a Focus on the Heat Shock Protein 70 (HSP70) Family. Marine Biotechnology. 17:23-32. 2015
- Xavier JCAllcock ALCherel YLipinski MRPierce GJRodhouse PGKRosa RShea EKStrugnell JMVidal EAGVillanueva RZiegler A. Future challenges in cephalopod research. The Journal of the Marine Biological Association of the United Kingdom. 95:999-1015. 2015
- Hill EIngram BARourke MMitchell JStrugnell JM. Genetic diversity and population structure of the threatened freshwater catfish, Tandanus tandanus, in Victoria, Australia. Conservation Genetics. 16:317-329. 2015
- Doyle SRGriffith ISMurphy NPStrugnell JM. Low-coverage MiSeq next generation sequencing reveals the mitochondrial genome of the Eastern Rock Lobster, Sagmariasus verreauxi. Mitochondrial DNA. 26:844-845. 2015
- Oellermann MStrugnell JMLieb BMark FC. Positive selection in octopus haemocyanin indicates functional links to temperature adaptation. BMC Evolutionary Biology. 15. 2015
- Ramos JEPecl GTSemmens JMStrugnell JMLeon RIMoltschaniwskyj NA. Reproductive capacity of a marine species (Octopus tetricus) within a recent range extension area. Marine and Freshwater Research. 66:999-1008. 2015
- Allcock ALLindgren AStrugnell JM. The contribution of molecular data to our understanding of cephalopod evolution and systematics: a review. Journal of Natural History. 49:1373-1421. 2015
- Amor MDNorman MDCameron HEStrugnell JM. Allopatric Speciation within a Cryptic Species Complex of Australasian Octopuses. PLoS ONE. 9:1-13. 2014
- Ramos JEPecl GTMoltschaniwskyj NAStrugnell JMLeon RISemmens JM. Body Size, Growth and Life Span: Implications for the Polewards Range Shift of Octopus tetricus in South-Eastern Australia. PLoS ONE. 9:1-9. 2014
- Strugnell JNorman MVecchione MGuzik MAllcock A. The ink sac clouds octopod evolutionary history. Hydrobiologia: the international journal on limnology and marine sciences. 725:215-235. 2014
- Morgan EMJGreen BSMurphy NPStrugnell JM. Investigation of Genetic Structure between Deep and Shallow Populations of the Southern Rock Lobster, Jasus edwardsii in Tasmania, Australia. PLoS ONE. 8:e77978-e77978. 2013
- Linse KGriffiths HJBarnes DKABrandt ADavey NDavid BDe Grave Sd′Udekem d′Acoz CEléaume MGlover AGHemery LGMah CMartín-Ledo RMunilla TO′Loughlin MPierrat BSaucède TSands CJStrugnell JMEnderlein P. The macro- and megabenthic fauna on the continental shelf of the eastern Amundsen Sea, Antarctica. Continental Shelf Research. 68:80-90. 2013
- Kaiser SBrandão SNBrix SBarnes DKABowden DAIngels JLeese FSchiaparelli SArango CPBadhe RBax NBlazewicz-Paszkowycz MBrandt ABrenke NCatarino AIDavid BDe Ridder CDubois PEllingsen KEGlover AGGriffiths HJGutt JHalanych KMHavermans CHeld CJanussen DLörz A-NPearce DAPierrat BRiehl TRose ASands CJSoler-Membrives ASchüller MStrugnell JMVanreusel AVeit-Köhler GWilson NGYasuhara M. Patterns, processes and vulnerability of Southern Ocean benthos: a decadal leap in knowledge and understanding. Marine Biology: international journal on life in oceans and coastal waters. 160:2295-2317. 2013
- Breton GStrugnell JDonovan DT. A coleoid gladius (Mollusca, Cephalopoda) from the Albian of Normandy (France): A new squid genus and species. Annales de Paleontologie. 99:275-283. 2013
- Moreau CLinse KGriffiths HBarnes DKaiser SGlover ASands CStrugnell JEnderlein PGeissler P. Amundsen Sea Mollusca from the BIOPEARL II expedition. ZooKeys. 294:1-8. 2013
- Robinson NSmith BCooke IStrugnell J. A snail's pace: A preliminary analysis of the effects of stress and genetics on movement of Haliotis. Aquaculture. 376-379:25-35. 2013
- Winkelmann ICampos PFStrugnell JCherel YSmith PJKubodera TAllcock LKampmann MLSchroeder HGuerra ANorman MFinn JIngrao DClarke MGilbert MTP. Mitochondrial genome diversity and population structure of the giant squid Architeuthis: Genetics sheds new light on one of the most enigmatic marine species. Proceedings of the Royal Society of London: Biological Sciences. 280. 2013
- Albertin CBBonnaud LBrown CTCrookes-Goodson WJda Fonseca RRDi Cristo CDilkes BPEdsinger-Gonzales EFreeman RMHanlon RTKoenig KMLindgren ARMartindale MQMinx PMoroz LLNödl M-TNyholm SVOgura APungor JRRosenthal JJCSchwarz EMShigeno SStrugnell JMWollesen TZhang GRagsdale CW. Cephalopod genomics: A plan of strategies and organization. Standards in Genomic Sciences. 7:175-188. 2012
- Allcock ALStrugnell JM. Southern Ocean diversity: new paradigms from molecular ecology. Trends in Ecology and Evolution. 27:520-528. 2012
- STRUGNELL JMWATTS PCSMITH PJALLCOCK AL. Persistent genetic signatures of historic climatic events in an Antarctic octopus. Molecular Ecology. 21:2775-2787. 2012
- Allcock AStrugnell J. Southern ocean diversity : new paradigms from molecular ecology. Trends in Ecology and Evolution. 27:520-528. 2012
- ALLCOCK ALOUISECOOKE IRARSTRUGNELL JANM. What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda?. Zoological Journal of the Linnean Society. 161:573-586. 2011
- Allcock ALBarratt IEléaume MLinse KNorman MDSmith PJSteinke DStevens DWStrugnell JM. Cryptic speciation and the circumpolarity debate: A case study on endemic Southern Ocean octopuses using the COI barcode of life. Deep-Sea Research Part 2: Topical Studies in Oceanography. 58:242-249. 2011
- Dettai AAdamowizc SJAllcock LArango CPBarnes DKABarratt IChenuil ACouloux ACruaud CDavid BDenis FDenys GDíaz AEléaume MFéral JPFroger AGallut CGrant RGriffiths HJHeld CHemery LGHosie GKuklinski PLecointre GLinse KLozouet PMah CMonniot FNorman MDO'Hara TOzouf-Costaz CPiedallu CPierrat BPoulin EPuillandre NRiddle MSamadi SSaucède TSchubart CSmith PJStevens DWSteinke DStrugnell JMTarnowska KWadley VAmeziane N. DNA barcoding and molecular systematics of the benthic and demersal organisms of the CEAMARC survey. Polar Science. 5:298-312. 2011
- Strugnell JMCherel YCooke IRGleadall IGHochberg FGIbáñez CMJorgensen ELaptikhovsky VVLinse KNorman MVecchione MVoight JRAllcock AL. The Southern Ocean: Source and sink?. Deep-Sea Research Part 2: Topical Studies in Oceanography. 58:196-204. 2011
- Hunt BStrugnell JBednarsek NLinse KNelson RJPakhomov ESeibel BSteinke DWürzberg L. Poles Apart: The “Bipolar” Pteropod Species Limacina helicina Is Genetically Distinct Between the Arctic and Antarctic Oceans. PLoS ONE. 5:e9835-e9835. 2010
- Donovan DTStrugnell JM. A redescription of the fossil coleoid cephalopod genusPalaeololigoNaef, 1921 (Decapodiformes: Palaeololiginidae) and its relationship to Recent squids. Journal of Natural History. 44:1475-1492. 2010
- Collins MALaptikhovsky VStrugnell JM. Expanded description of Opisthoteuthis hardyi based on new specimens from the Patagonian slope. The Journal of the Marine Biological Association of the United Kingdom. 90:605-611. 2010
- Strugnell JAllcock AL. Co-estimation of phylogeny and divergence times of Argonautoidea using relaxed phylogenetics. Molecular Phylogenetics and Evolution. 54:701-708. 2010
- Jorgensen EMStrugnell JMAllcock AL. Description and phylogenetic relationships of a new genus of octopus, Sasakiopus (Cephalopoda: Octopodidae), from the Bering Sea, with a redescription of Sasakiopus salebrosus (Sasaki, 1920). Journal of Molluscan Studies. 76:57-66. 2010
- STRUGNELL JANMALLCOCK ALOUISEWATTS PHILLIPC. A panel of microsatellite loci from two species of octopus,Pareledone turqueti(Joubin, 1905) andPareledone charcoti(Joubin, 1905). Molecular Ecology Resources. 9:1239-1242. 2009
- STRUGNELL JANVOIGHT JANETRCOLLINS PATRICKCALLCOCK ALOUISE. Molecular phylogenetic analysis of a known and a new hydrothermal vent octopod: their relationships with the genus Benthoctopus (Cephalopoda: Octopodidae). Zootaxa. 2096:442-459. 2009
- STRUGNELL JANMALLCOCK ALOUISEWATTS PHILLIPC. Microsatellite loci from the endemic Southern Ocean octopusAdelieledone polymorpha(Robson, 1930). Molecular Ecology Resources. 9:1068-1070. 2009
- Vecchione MAllcock LPiatkowski UStrugnell J. Benthoctopus rigbyae, n. sp., A New Species of Cephalopod (Octopoda; Incirrata) from Near the Antarctic Peninsula. Malacologia. 51:13-28. 2009
- Strugnell JMRogers ADProdöhl PACollins MAAllcock AL. The thermohaline expressway: the Southern Ocean as a centre of origin for deep-sea octopuses. Cladistics. 24:853-860. 2008
- ALLCOCK ALOUISESTRUGNELL JANMJOHNSON MARKP. How useful are the recommended counts and indices in the systematics of the Octopodidae (Mollusca: Cephalopoda). Biological Journal of the Linnean Society. 95:205-218. 2008
- Strugnell JMCollins MAAllcock AL. Molecular evolutionary relationships of the octopodid genus Thaumeledone (Cephalopoda: Octopodidae) from the Southern Ocean. Antarctic Science. 20:245-251. 2008
- Strugnell JNishiguchi MK. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) inferred from three mitochondrial and six nuclear loci: a comparison of alignment, implied alignment and analysis methods. Journal of Molluscan Studies. 73:399-410. 2007
- Allcock ALStrugnell JMProdöhl PPiatkowski UVecchione M. A new species of Pareledone (Cephalopoda: Octopodidae) from Antarctic Peninsula Waters. Polar Biology. 30:883-893. 2007
- Allcock ALStrugnell JMRuggiero HCollins MA. Redescription of the deep-sea octopodBenthoctopus normani(Massy 1907) and a description of a new species from the Northeast Atlantic. Marine Biology Research. 2:372-387. 2006
- Strugnell JNorman MCooper A. DNA from beach-washed shells of the Ram's Horn squid, Spirula spirula. Bulletin of Marine Science. 78:389-391. 2006
- Strugnell JJackson JDrummond AJCooper A. Divergence time estimates for major cephalopod groups: evidence from multiple genes. Cladistics. 22:89-96. 2006
- Allcock ALStrugnell JMRuggiero HCollins MA. Redescription of the deep-sea octopod Benthoctopus normani (Massy 1907) and a description of a new species from the Northeast Atlantic. Marine Biology Research. 2:372-387. 2006
- Strugnell JNorman MJackson JDrummond AJCooper A. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework. Molecular Phylogenetics and Evolution. 37:426-441. 2005
- Strugnell JNorman MDrummond AJCooper A. Neotenous origins for pelagic octopuses. Current Biology. 14:R300-R301. 2004
- Strugnell JMSouthgate PC. Changes in tissue composition during larval development of the blacklip pearl oyster, Pinctada margaritifera (L.). Molluscan Research. 23:179-179. 2003
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chapter
- Cooke IRWhitelaw BCaruana NNorman MStrugnell JM. Toxicity in cephalopods. 1-15. 2015
- Strugnell JMAllcock AL. Southern Ocean Evolution in a Global Context: A molecular viewpoint. 35-53. 2013
- Strugnell JMAllcock AL. Cephalopoda. 242-246. 2009
- Strugnell JM. Scaphopoda. 239-241. 2009
- Strugnell JMJackson JA. Phylogenetic fuses and evolutionary 'explosions': conflicting evidence and critical tests. 41-65. 2003
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comment
- Strugnell JMShafee TKakkou CBarták MHájek JSkácelová KHazdrová J. Effects of controlled oxidative stress and uncouplers on primary photosynthetic processes in vegetative cells of Antarctic alga Zygnema sp.. Czech Polar Reports. 96-107. 2016
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conference paper
- Roura Labiaga ADoyle SHall NStrugnell JM. Intestinal flora of wild Octopus vulgaris paralarvae and their zooplankton prey: a metagenomic search of “probiotics” for use in aquaculture 2015
- Roura Labiaga ADoyle SHall NGuerra AGonzález AFStrugnell JM. The planktonic stage of Octopus vulgaris paralarvae in the Canary current Eastern boundary upwelling ecosystem: distribution, dispersal and diet 2015
- Roura Labiaga AStrugnell JM. Octopus on the move: a genetic look to their diet and microbiome 2015
- Roura Labiaga AGuerra AGonzález AFStrugnell JM. Small copepods add zooplankton to their diet: consequences for pelagic functioning, trophic webs and carbon fluxes 2015
- Strugnell JMLindgren AR. A barcode of life database for the Cephalopoda? Considerations and concerns. Reviews in Fish Biology and Fisheries. 337-344. 2007
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letter
- Shafee TStrugnell J. Kudos for female Antarctic researchers. Nature. 148-148. 2016
- Shafee TStrugnell J. Kudos for female Antarctic researchers. Nature. 148-148. 2016
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other publication
- Hill ELinacre AMTToop SMurphy NPStrugnell JM. The complete mitochondrial genome of Axis porcinus (Mammalia: Cervidae) from Victoria, Australia, using MiSeq sequencing. Mitochondrial DNA Part B: Resources. 453-454. 2017