selected publications
-
academic article
-
Kidsley AKO'Dea MEbrahimie EMohammadi Dehcheshmeh MSaputra SJordan DJohnson JRGordon DTurni CDjordjevic SPAbraham STrott DJ. Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats.
Veterinary Microbiology.
245:1-7.
2020
Full text if available -
Rahbar SPashaiasl MEzzati MAhmadi AsrBadr YMohammadi Dehcheshmeh MMohammadi SAGhaffari Novin M. MicroRNA‐based regulatory circuit involved in sperm infertility.
Andrologia.
52:1-8.
2020
Full text if available -
Butcher RGPettett LMFabijan JEbrahimie EMohammadi-Dehcheshmeh MSpeight KNBoardman WSJBird PSTrott DJ. Periodontal disease in free-ranging koalas (Phascolarctos cinereus) from the Mount Lofty Ranges, South Australia, and its association with koala retrovirus infection.
Australian Veterinary Journal.
98.
2020
Full text if available -
Rahmatizadeh FPashaei-Asl FMohammadi Dehcheshmeh MRahbar SLaleataei MAziz SGGRad JSPashaiasl M. Reduction in the viability of human cervical cancer hela cell line via indirect co-culture with amniotic fluid-derived mesenchymal stem cells.
International Journal of Women's Health and Reproduction Sciences.
8:319-327.
2020
Full text if available -
Ebrahimi MMohammadi-Dehcheshmeh MEbrahimie EPetrovski KR. Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models.
Computers in Biology and Medicine.
114.
2019
Full text if available -
Tahmasebi AEbrahimie EPakniyat HEbrahimi MMohammadi-Dehcheshmeh M. Insights from the Echinacea purpurea (L.) Moench transcriptome: Global reprogramming of gene expression patterns towards activation of secondary metabolism pathways.
Industrial Crops and Products.
132:365-376.
2019
Full text if available -
Mohammadi Dehcheshmeh MAlanazi IOAl Shehri ZSEbrahimie EGiahi HMohammadi‐Dehcheshmeh M. Non‐coding and coding genomic variants distinguish prostate cancer, castration‐resistant prostate cancer, familial prostate cancer, and metastatic castration‐resistant prostate cancer from each other.
Molecular Carcinogenesis.
58:862-874.
2019
Full text if available -
Mohammadi Dehcheshmeh MSpeight KNHouston‐Francis MMohammadi‐Dehcheshmeh MEbrahimie ESaputra STrott DJ. Oxalate‐degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis.
Australian Veterinary Journal.
97:166-170.
2019
Full text if available -
Tahmasebi AEbrahimie EPakniyat HEbrahimi MMohammadi-Dehcheshmeh M. Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology.
Gene.
691:114-124.
2019
Full text if available -
Alanazi IOAlYahya SAEbrahimie EMohammadi-Dehcheshmeh M. Computational systems biology analysis of biomarkers in lung cancer; unravelling genomic regions which frequently encode biomarkers, enriched pathways, and new candidates.
Gene.
659:29-36.
2018
Full text if available -
Mohammadi-Dehcheshmeh MNiazi AEbrahimi MTahsili MNurollah ZEbrahimi Khaksefid REbrahimi MEbrahimie E. Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis.
Frontiers in Plant Science.
9:1-24.
2018
Full text if available -
Kargarfard FSami AMohammadi-Dehcheshmeh MEbrahimie E. Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments.
BMC Genomics.
17.
2016
Full text if available -
Tavizi AJavaran MJMoieni AMohammadi-Dehcheshmeh MMohebodini MEbrahimie E. Root and shoot parts of strawberry: Factories for production of functional human pro-insulin.
Molecular Biology Reports: an international journal on molecular and cellular biology.
42:1013-1023.
2015
Full text if available -
Mohammadi-Dehcheshmeh MEbrahimie ETyerman SDKaiser BN. A novel method based on combination of semi-in vitro and in vivo conditions in Agrobacterium rhizogenes-mediated hairy root transformation of Glycine species.
In Vitro Cellular and Developmental Biology: Plant.
50:282-291.
2014
Full text if available -
Zinati ZZamansani FHossein KayvanJoo AEbrahimi MEbrahimi MEbrahimie EMohammadi Dehcheshmeh M. New layers in understanding and predicting α-linolenic acid content in plants using amino acid characteristics of omega-3 fatty acid desaturase.
Computers in Biology and Medicine.
54:14-23.
2014
Full text if available -
Chiasson DMLoughlin PCMazurkiewicz DMohammadidehcheshmeh MFedorova EEOkamoto MMcLean EGlass ADMSmith SEBisseling TTyerman SDDay DAKaiser BN. SoybeanSAT1(Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport.
Proceedings of the National Academy of Sciences of USA.
111:4814-4819.
2014
Full text if available -
Tahmasebi AAram FEbrahimi MMohammadi-Dehcheshmeh MEbrahimie E. Genome-wide analysis of cytosolic and chloroplastic isoforms of glutathione reductase in plant cells.
Plant OMICS.
5:94-102.
2012
-
Tahrokh EEbrahimi MEbrahimi MZamansani FSarvestani NRMohammadi-Dehcheshmeh MGhaemi MREbrahimie E. Comparative study of ammonium transporters in different organisms by study of a large number of structural protein features via data mining algorithms.
Genes and Genomics.
33:565-575.
2011
Full text if available -
Mohammadi-Dehcheshmeh MKhalighi ANaderi RSardari MEbrahimie E. Petal: a reliable explant for direct bulblet regeneration of endangered wild populations of Fritillaria imperialis L..
Acta Physiologiae Plantarum.
30:395-399.
2008
Full text if available -
Ebrahimie EMohammadi Dehcheshmeh M. MM-D. AK. RN. EE. MS. Indirect Somatic Embryogenesis from Petal Explant of Endangered Wild Population of Fritillaria imperialis.
Pakistan Journal of Biological Sciences.
10:1875-1879.
2007
Full text if available -
Ebrahimie EHosseinzadeh ANagavi MRGhannadha MRMohammadie-Dehcheshmeh M. Combined Direct Regeneration Protocols in Tissue Culture of Different Cumin Genotypes Based on Pre-existing Meristems.
Pakistan Journal of Biological Sciences.
10:1360-1370.
2007
Full text if available -
Ebrahimie ENaghavi MRHosseinzadeh ABehamta MRMohammadi-Dehcheshmeh MSarrafi ASpangenberg G. Induction and comparison of different in vitro morphogenesis pathways using embryo of cumin (Cuminum cyminum L.) as a model material.
Plant Cell, Tissue and Organ Culture: an international journal on in vitro culture of higher plants.
90:293-311.
2007
Full text if available -
Ebrahimie EHabashy AAMohammadie-Dehcheshmeh MGhannadha MRGhareyazie BYazdi-Amadi B. Direct shoot regeneration from mature embryo as a rapid and genotype-independent pathway in tissue culture of heterogeneous diverse sets of cumin (Cuminum cyminum L.) genotypes.
In Vitro Cellular and Developmental Biology: Plant.
42:455-460.
2006
Full text if available -
Mohammadi Dehcheshmeh MEbrahimie EHabashi AAGhareyazie BGhannadha MMohammadie M. A rapid and efficient method for regeneration of plantlets from embryo explants of cumin (Cuminum cyminum).
Plant Cell, Tissue and Organ Culture: an international journal on in vitro culture of higher plants.
75:19-25.
2003
Full text if available
-
Kidsley AKO'Dea MEbrahimie EMohammadi Dehcheshmeh MSaputra SJordan DJohnson JRGordon DTurni CDjordjevic SPAbraham STrott DJ. Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats.
Veterinary Microbiology.
245:1-7.
2020
-
conference paper
-
Ebrahimie EMohammadi-Dehcheshmeh MEbrahimi MEbrahimi M. A study on functional modulations of genome in somatic embryogenesis pathway using EST analysis.
New Biotechnology.
S43-S43.
2010
Full text if available -
Ebrahimi MEbrahimie EEbrahimi MDeihimi TDelavari AMohammadi-dehcheshmeh M. Application of neural networks methods to define the most important features contributing to xylanase enzyme thermostability.
2009 IEEE Congress on Evolutionary Computation.
2885-2891.
2009
Full text if available -
Khalighi ADehcheshmeh MMEbrahimie ESardari MNaderi RNaderi R. Different developmental stages of mother plants induct different morphogenesis pathways in in vitro culture of Fritillaria imperialis and Fritillaria persica.
Hortscience.
984-985.
2006
-
Mohammadi-Dehcheshmeh MKhalighi AEbrahimie ESardari MNaderi R. Direct bulblet regeneration from mature embryo: A rapid, efficient and genotype-independent in vitro morphogenesis pathway for preservation of endangered wild populations of Fritillaria imperialis and Fritillaria persica.
Hortscience.
1066-1066.
2006
-
Ebrahimie EMohammadi-Dehcheshmeh MSardari M. Fritillaria species are at risk of extinction in Iran: Study on effective factors and necessity of international attention.
Hortscience.
1002-1002.
2006
-
Ebrahimie EDehcheshmeh MMTaleie AGannadha MRHabashi AA. PLANT REGENERATION AND TRANSIENT GUS REPORTER GENE EXPRESSION IN CUM IN (CUMINIUM CYMINNIUM) EMBRYOS FOLLOWING PARTICLE BOMBARDMENT AND AGROBACTERIUM-MEDIATED TRANSFORMATION: ROLES OF PLANT GROWTH REGULATORS COMBINATIONS OF INOCULATION AND BOMBARDMENT MEDIUM.
Acta Physiologiae Plantarum.
61-61.
2004
-
Ebrahimie EMohammadi-Dehcheshmeh MEbrahimi MEbrahimi M. A study on functional modulations of genome in somatic embryogenesis pathway using EST analysis.
New Biotechnology.
S43-S43.
2010