selected publications
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academic article
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Girma GNatsume SCarluccio AVTakagi HMatsumura HUemura AMuranaka STakagi HStavolone LGedil MSpillane CTerauchi RTamiru M. Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling.
PLoS ONE.
14:e0216912-e0216912.
2019
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Itoh NSegawa TTamiru MAbe ASakamoto SUemura AOikawa KKutsuzawa HKoga HImamura TTerauchi RTakagi H. Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa.
Theoretical and Applied Genetics: international journal of plant breeding research.
132.
2019
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Seto YYasui RKameoka HOli MCao MTerauchi RSakurada AHirano RKisugi THanada AUmehara MSeo EAkiyama KBurke JTakeda-Kamiya NLi WHirano YHakoshima TMashiguchi KNoel JPKyozuka JYamaguchi S. Strigolactone perception and deactivation by a hydrolase receptor DWARF14.
Nature Communications.
10.
2019
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Robinson AJOli MSalby RBolitho CWilliams APHuggard SFisch EUnsworth KWhelan JMLewsey MG. AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.
BMC Plant Biology.
18:1-8.
2018
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Oli MHardcastle TJLewsey MG. Regulation of genome-wide DNA methylation by mobile small RNAs.
New Phytologist.
217:540-546.
2018
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Cannarozzi GChanyalew SAssefa KBekele ABlösch RWeichert AKlauser DPlaza-Wüthrich SEsfeld KJöst MRindisbacher AJifar HJohnson-Chadwick VAbate EWang WKamies RHusein NKebede WTolosa KGenet YGebremeskel KFerede BMekbib FMartinelli FPedersen HCRafudeen SHussein SOli MTNakayama NRobinson MBarker IZeeman STadele Z. Technology generation to dissemination: lessons learned from the tef improvement project.
Euphytica: international journal on plant breeding.
214:1-20.
2018
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Oli MNatsume STakagi HWhite BYaegashi HShimizu MYoshida KUemura AOikawa KAbe AUrasaki NMatsumura HBabil PYamanaka SMatsumoto RMuranaka SGirma GLopez-Montes AGedil MBhattacharjee RAbberton MKumar PLRabbi ITsujimura MTerachi THaerty WCorpas MKamoun SKahl GTakagi HAsiedu RTerauchi R. Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination.
BMC Biology.
15:1-20.
2017
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Tamiru MTakagi HAbe AYokota TKanzaki HOkamoto HSaitoh HTakahashi HFujisaki KOikawa KUemura ANatsume SJikumaru YMatsuura HUmemura KTerry MJTerauchi R. A chloroplast-localized protein LESION AND LAMINA BENDING affects defence and growth responses in rice.
New Phytologist.
210:1282-1297.
2016
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Terauchi RKanzaki HFujisaki KTakagi HAbe AYoshida KOkuyama YTamiru MSaitoh H. Whole genome sequencing approaches to understand Magnaporthe-rice interactions.
Physiological and Molecular Plant Pathology.
95:4-7.
2016
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Tamiru MUndan JRTakagi HAbe AYoshida KUndan JQNatsume SUemura ASaitoh HMatsumura HUrasaki NYokota TTerauchi R. A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.).
Plant Molecular Biology: an international journal on molecular biology, biochemistry and genetic engineering.
88:85-99.
2015
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Tamiru MYamanaka SMitsuoka CBabil PTakagi HLopez-Montes ASartie AAsiedu RTerauchi R. Development of genomic simple sequence repeat markers for yam.
Crop Science: a journal serving the international community of crop scientists.
55:2191-2200.
2015
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Takagi HTamiru MAbe AYoshida KUemura AYaegashi HObara TOikawa KUtsushi HKanzaki EMitsuoka CNatsume SKosugi SKanzaki HMatsumura HUrasaki NKamoun STerauchi R. MutMap accelerates breeding of a salt-tolerant rice cultivar.
Nature Biotechnology.
33:445-449.
2015
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Fekih RTamiru MKanzaki HAbe AYoshida KKanzaki ESaitoh HTakagi HNatsume SUndan JRUndan JTerauchi R. The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.
Molecular Genetics and Genomics: an international journal.
290:611-622.
2015
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Utsushi HAbe ATamiru MOgasawara YObara TSato EOchiai YTerauchi RTakagi H. WIPPER: An accurate and efficient field phenotyping platform for large-scale applications.
Breeding Science.
65:285-289.
2015
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Kanzaki HYoshida KSaitoh HTamiru MTerauchi R. Protoplast cell death assay to study magnaporthe oryzae AVR gene function in rice.
Methods in Molecular Biology.
1127:269-275.
2014
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Tamiru MAbe AUtsushi HYoshida KTakagi HFujisaki KUndan JRRakshit STakaichi SJikumaru YYokota TTerry MJTerauchi R. The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency.
New Phytologist.
202:116-131.
2014
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Fekih RTakagi HTamiru MAbe ANatsume SYaegashi HSharma SSharma SKanzaki HMatsumura HSaitoh HMitsuoka CUtsushi HUemura AKanzaki EKosugi SYoshida KCano LKamoun STerauchi R. MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice.
PLoS ONE.
8:1-10.
2013
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Takagi HUemura AYaegashi HTamiru MAbe AMitsuoka CUtsushi HNatsume SKanzaki HMatsumura HSaitoh HYoshida KCano LMKamoun STerauchi R. MutMap-Gap: Whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.
New Phytologist.
200:276-283.
2013
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Takagi HAbe AYoshida KKosugi SNatsume SMitsuoka CUemura AUtsushi HTamiru MTakuno SInnan HCano LMKamoun STerauchi R. QTL-seq: Rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.
The Plant Journal.
74:174-183.
2013
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Abe AKosugi SYoshida KNatsume STakagi HKanzaki HMatsumura HYoshida KMitsuoka CTamiru MInnan HCano LKamoun STerauchi R. Genome sequencing reveals agronomically important loci in rice using MutMap.
Nature Biotechnology.
30:174-179.
2012
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Undan JRTamiru MAbe AYoshida KKosugi STakagi HYoshida KKanzaki HSaitoh HFekih RSharma SUndan JYano MTerauchi R. Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.).
Genes and Genetic Systems.
87:169-179.
2012
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Terauchi RAbe ATakagi HYoshida KKosugi SNatsume SYaegashi HKanzaki HMatsumura HMitsuoka CUtsushi HTamiru M. Whole genome sequencing and future breeding of rice.
Journal of Plant Biochemistry and Biotechnology.
21:10-14.
2012
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Okuyama YKanzaki HAbe AYoshida KTamiru MSaitoh HFujibe TMatsumura HShenton MGalam DCUndan JIto ASone TTerauchi R. A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes.
The Plant Journal.
66:467-479.
2011
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Oli MBecker HCMaass BL. Comparative Analysis of Morphological and Farmers’ Cognitive Diversity in Yam Landraces (Dioscorea spp.) from Southern Ethiopia.
Tropical Agriculture and Development.
55:28-43.
2011
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Tamiru MMaass BLPawelzik E. Characterizing diversity in composition and pasting properties of tuber flour in yam germplasm (Dioscoreaspp.) from Southern Ethiopia.
Journal of the Science of Food and Agriculture.
88:1675-1685.
2008
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Tamiru MBecker HCMaass BL. Diversity, distribution and management of yam landraces (Dioscorea spp.) in Southern Ethiopia.
Genetic Resources and Crop Evolution: an international journal.
55:115-131.
2008
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Tamiru MBecker HCMaass BL. Genetic Diversity in Yam Germplasm from Ethiopia and Their Relatedness to the Main Cultivated Species Assessed by AFLP Markers.
Crop Science: a journal serving the international community of crop scientists.
47:1744-1744.
2007
Full text if available
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Girma GNatsume SCarluccio AVTakagi HMatsumura HUemura AMuranaka STakagi HStavolone LGedil MSpillane CTerauchi RTamiru M. Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling.
PLoS ONE.
14:e0216912-e0216912.
2019
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chapter
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Abe ATakagi HYaegashi HNatsume SUtsushi HOli MTTerauchi R. Next-generation breeding of rice by whole- genome approaches.
511-522.
2018
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Terauchi RAbe ATakagi HTamiru MFekih RNatsume SYaegashi HKosugi SKanzaki HMatsumura HSaitoh HYoshida KCano LKamoun S. Whole genome sequencing to identify genes and QTL in rice.
33-42.
2015
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Terauchi RYoshida KSaitoh HMatsumura HTamiru MAbe AUndan JOkuyama YOli MT. Association genetics reveals genes critical for Magnaporthe-rice interactions.
33-38.
2011
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Rakshit SKanzaki HMatsumura HRakshit AFujibe TOkuyama YYoshida KOli MShenton MUtsushi HMitsuoka CAbe AKiuchi YTerauchi R. Use of TILLING for Reverse and Forward Genetics of Rice.
185-197.
2010
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Abe ATakagi HYaegashi HNatsume SUtsushi HOli MTTerauchi R. Next-generation breeding of rice by whole- genome approaches.
511-522.
2018
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conference paper
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Terauchi RYoshida KSaitoh HKanzaki HOkuyama YFujisaki KMiya AAbe ATamiru MTosa Y. Studying genome-wide DNA polymorphisms to understand Magnaporthe-rice interactions.
Australasian Plant Pathology.
328-334.
2011
Full text if available
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Terauchi RYoshida KSaitoh HKanzaki HOkuyama YFujisaki KMiya AAbe ATamiru MTosa Y. Studying genome-wide DNA polymorphisms to understand Magnaporthe-rice interactions.
Australasian Plant Pathology.
328-334.
2011
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report
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Lewsey MGBeddoe TOli MCameron T. Development of a Molecular Toolkit Enabling Genetic Assessment of Opium Poppy (Papaver somniferum).
1-70.
2018
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Lewsey MGOli MWang A. Effects of Organic Amendments on Trifluralin Toxicity against Papaver somniferum
2018
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Lewsey MGOli MTGendall A. Optimising germination and establishment of Opium Poppy (Papaver somniferum).
1-20.
2017
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Lewsey MGBeddoe TOli MCameron T. Development of a Molecular Toolkit Enabling Genetic Assessment of Opium Poppy (Papaver somniferum).
1-70.
2018