selected publications
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academic article
- Robinson AJTamiru MSalby RBolitho CWilliams AHuggard SFisch EUnsworth KWhelan JLewsey MG. AgriSeqDB: An online RNA-Seq database for functional studies of agriculturally relevant plant species. BMC Plant Biology. 18. 2018
- Oli MHardcastle TJLewsey MG. Regulation of genome-wide DNA methylation by mobile small RNAs. New Phytologist. 217:540-546. 2018
- Cannarozzi GChanyalew SAssefa KBekele ABlösch RWeichert AKlauser DPlaza-Wüthrich SEsfeld KJöst MRindisbacher AJifar HJohnson-Chadwick VAbate EWang WKamies RHusein NKebede WTolosa KGenet YGebremeskel KFerede BMekbib FMartinelli FPedersen HCRafudeen SHussein SOli MTNakayama NRobinson MBarker IZeeman STadele Z. Technology generation to dissemination: lessons learned from the tef improvement project. Euphytica: international journal on plant breeding. 214:1-20. 2018
- Oli MNatsume STakagi HWhite BYaegashi HShimizu MYoshida KUemura AOikawa KAbe AUrasaki NMatsumura HBabil PYamanaka SMatsumoto RMuranaka SGirma GLopez-Montes AGedil MBhattacharjee RAbberton MKumar PLRabbi ITsujimura MTerachi THaerty WCorpas MKamoun SKahl GTakagi HAsiedu RTerauchi R. Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC Biology. 15:1-20. 2017
- Tamiru MTakagi HAbe AYokota TKanzaki HOkamoto HSaitoh HTakahashi HFujisaki KOikawa KUemura ANatsume SJikumaru YMatsuura HUmemura KTerry MJTerauchi R. A chloroplast-localized protein LESION AND LAMINA BENDING affects defence and growth responses in rice. New Phytologist. 210:1282-1297. 2016
- Terauchi RKanzaki HFujisaki KTakagi HAbe AYoshida KOkuyama YTamiru MSaitoh H. Whole genome sequencing approaches to understand Magnaporthe-rice interactions. Physiological and Molecular Plant Pathology. 95:4-7. 2016
- Tamiru MUndan JRTakagi HAbe AYoshida KUndan JQNatsume SUemura ASaitoh HMatsumura HUrasaki NYokota TTerauchi R. A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.). Plant Molecular Biology: an international journal on molecular biology, biochemistry and genetic engineering. 88:85-99. 2015
- Tamiru MYamanaka SMitsuoka CBabil PTakagi HLopez-Montes ASartie AAsiedu RTerauchi R. Development of genomic simple sequence repeat markers for yam. Crop Science: a journal serving the international community of crop scientists. 55:2191-2200. 2015
- Takagi HTamiru MAbe AYoshida KUemura AYaegashi HObara TOikawa KUtsushi HKanzaki EMitsuoka CNatsume SKosugi SKanzaki HMatsumura HUrasaki NKamoun STerauchi R. MutMap accelerates breeding of a salt-tolerant rice cultivar. Nature Biotechnology. 33:445-449. 2015
- Fekih RTamiru MKanzaki HAbe AYoshida KKanzaki ESaitoh HTakagi HNatsume SUndan JRUndan JTerauchi R. The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response. Molecular Genetics and Genomics: an international journal. 290:611-622. 2015
- Utsushi HAbe ATamiru MOgasawara YObara TSato EOchiai YTerauchi RTakagi H. WIPPER: An accurate and efficient field phenotyping platform for large-scale applications. Breeding Science. 65:285-289. 2015
- Kanzaki HYoshida KSaitoh HTamiru MTerauchi R. Protoplast cell death assay to study magnaporthe oryzae AVR gene function in rice. Methods in Molecular Biology. 1127:269-275. 2014
- Tamiru MAbe AUtsushi HYoshida KTakagi HFujisaki KUndan JRRakshit STakaichi SJikumaru YYokota TTerry MJTerauchi R. The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency. New Phytologist. 202:116-131. 2014
- Fekih RTakagi HTamiru MAbe ANatsume SYaegashi HSharma SSharma SKanzaki HMatsumura HSaitoh HMitsuoka CUtsushi HUemura AKanzaki EKosugi SYoshida KCano LKamoun STerauchi R. MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice. PLoS ONE. 8:1-10. 2013
- Takagi HUemura AYaegashi HTamiru MAbe AMitsuoka CUtsushi HNatsume SKanzaki HMatsumura HSaitoh HYoshida KCano LMKamoun STerauchi R. MutMap-Gap: Whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii. New Phytologist. 200:276-283. 2013
- Takagi HAbe AYoshida KKosugi SNatsume SMitsuoka CUemura AUtsushi HTamiru MTakuno SInnan HCano LMKamoun STerauchi R. QTL-seq: Rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. The Plant Journal. 74:174-183. 2013
- Abe AKosugi SYoshida KNatsume STakagi HKanzaki HMatsumura HYoshida KMitsuoka CTamiru MInnan HCano LKamoun STerauchi R. Genome sequencing reveals agronomically important loci in rice using MutMap. Nature Biotechnology. 30:174-179. 2012
- Undan JRTamiru MAbe AYoshida KKosugi STakagi HYoshida KKanzaki HSaitoh HFekih RSharma SUndan JYano MTerauchi R. Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.). Genes and Genetic Systems. 87:169-179. 2012
- Terauchi RAbe ATakagi HYoshida KKosugi SNatsume SYaegashi HKanzaki HMatsumura HMitsuoka CUtsushi HTamiru M. Whole genome sequencing and future breeding of rice. Journal of Plant Biochemistry and Biotechnology. 21:10-14. 2012
- Okuyama YKanzaki HAbe AYoshida KTamiru MSaitoh HFujibe TMatsumura HShenton MGalam DCUndan JIto ASone TTerauchi R. A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes. The Plant Journal. 66:467-479. 2011
- Oli MBecker HCMaass BL. Comparative Analysis of Morphological and Farmers’ Cognitive Diversity in Yam Landraces (Dioscorea spp.) from Southern Ethiopia. Tropical Agriculture and Development. 55:28-43. 2011
- Tamiru MMaass BLPawelzik E. Characterizing diversity in composition and pasting properties of tuber flour in yam germplasm ( Dioscorea spp.) from Southern Ethiopia. Journal of the Science of Food and Agriculture. 88:1675-1685. 2008
- Tamiru MBecker HCMaass BL. Diversity, distribution and management of yam landraces (Dioscorea spp.) in Southern Ethiopia. Genetic Resources and Crop Evolution: an international journal. 55:115-131. 2008
- Tamiru MBecker HCMaass BL. Genetic Diversity in Yam Germplasm from Ethiopia and Their Relatedness to the Main Cultivated Species Assessed by AFLP Markers. Crop Science: a journal serving the international community of crop scientists. 47:1744-1744. 2007
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chapter
- Abe ATakagi HYaegashi HNatsume SUtsushi HOli MTTerauchi R. Next-generation breeding of rice by whole- genome approaches. 511-522. 2018
- Terauchi RAbe ATakagi HTamiru MFekih RNatsume SYaegashi HKosugi SKanzaki HMatsumura HSaitoh HYoshida KCano LKamoun S. Whole genome sequencing to identify genes and QTL in rice. 33-42. 2015
- Rakshit SKanzaki HMatsumura HRakshit AFujibe TOkuyama YYoshida KOli MShenton MUtsushi HMitsuoka CAbe AKiuchi YTerauchi R. Use of TILLING for Reverse and Forward Genetics of Rice. 185-197. 2010
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conference paper
- Terauchi RYoshida KSaitoh HKanzaki HOkuyama YFujisaki KMiya AAbe ATamiru MTosa Y. Studying genome-wide DNA polymorphisms to understand Magnaporthe-rice interactions. Australasian Plant Pathology. 328-334. 2011