Computational Biology
Concept
Vocabulary Service
Overview
subject area of
-
A Hybrid Genetic Programming Algorithm for Automated Design of Dispatching Rules Academic Article
-
A Portrait of the Transcriptome of the Neglected Trematode, Fasciola gigantica—Biological and Biotechnological Implications Academic Article
-
A Robust Elicitation Algorithm for Discovering DNA Motifs Using Fuzzy Self-Organizing Maps Academic Article
-
A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets Academic Article
-
A comparative map viewer integrating genetic maps for Brassica and Arabidopsis Academic Article
-
A complex gene cluster for indole-diterpene biosynthesis in the grass endophyte Neotyphodium lolii Academic Article
-
A curated compendium of phosphorylation motifs Academic Article
-
A draft genome sequence of the elusive giant squid, Architeuthis dux Academic Article
-
A further study on mining DNA motifs using fuzzy self-organizing maps Academic Article
-
A knowledge-based scoring function based on residue triplets for protein structure prediction Academic Article
-
A method to incorporate prior information into score test for genetic association studies Academic Article
-
A motif and amino acid bias bioinformatics pipeline to identify hydroxyproline-rich glycoproteins Academic Article
-
A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: Application to Arabidopsis Academic Article
-
A novel role for the pol I transcription factor ubtf in maintaining genome stability through the regulation of highly transcribed pol II genes Academic Article
-
A pHMM-ANN based discriminative approach to promoter identification in prokaryote genomic contexts Academic Article
-
A secreted Plasmodium falciparum kinase reveals a signature motif for classification of tyrosine kinase-like kinases Academic Article
-
A transcription factor contributes to pathogenesis and virulence in Streptococcus pneumoniae Academic Article
-
Abundance of intrinsically unstructured proteins in P. falciparum and other apicomplexan parasite proteomes Academic Article
-
Accumulating Variation at Conserved Sites in Potyvirus Genomes Is Driven by Species Discovery and Affects Degenerate Primer Design Academic Article
-
Accuracy of Predicting the Genetic Risk of Disease Using a Genome-Wide Approach Academic Article
-
Accurate and interpretable nanoSAR models from genetic programming-based decision tree construction approaches Academic Article
-
Advances in bioinformatics: Selected papers from APBC 2014 [Editorial] Editorial Article
-
AlignStat: a web-tool and R package for statistical comparison of alternative multiple sequence alignments Academic Article
-
An Accessible Proteogenomics Informatics Resource for Cancer Researchers Academic Article
-
An Introduction to Proteome Bioinformatics Chapter
-
An effective non-parametric method for globally clustering genes from expression profiles Academic Article
-
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis Academic Article
-
Analysis on relationship between extreme pathways and correlated reaction sets Academic Article
-
Application of Neural Networks to Large Dataset QSAR, Virtual Screening, and Library Design Academic Article
-
Approaches to defining dual-targeted proteins in Arabidopsis Academic Article
-
Arabinogalactan Proteins Are Required for Apical Cell Extension in the Moss Physcomitrella patens Academic Article
-
Assembly of the Type II Secretion System such as Found in Vibrio cholerae Depends on the Novel Pilotin AspS Academic Article
-
Assessment of DNA methylation profiling and copy number variation as indications of clonal relationship in ipsilateral and contralateral breast cancers to distinguish recurrent breast cancer from a second primary tumour Academic Article
-
Assessment of low-coverage nanopore long read sequencing for SNP genotyping in doubled haploid canola (Brassica napus L.) Academic Article
-
BASC: an integrated bioinformatics system for Brassica research Academic Article
-
Bacterial genomic G+C composition-eliciting environmental adaptation Academic Article
-
BeadArray Expression Analysis Using Bioconductor Academic Article
-
Bioavailability Prediction Based on Molecular Structure for a Diverse Series of Drugs Academic Article
-
Bioinformatic analysis of eosinophil activity and its implications for model and target species Academic Article
-
Bioinformatic approaches for predicting substrates of proteases Academic Article
-
Bioinformatics in protein kinases regulatory network and drug discovery Academic Article
-
Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment Academic Article
-
Bioinformatics tools and resources for analyzing protein structures Chapter
-
Bioinformatics tools for extracellular vesicles research Chapter
-
Breaking an impasse in pectin biosynthesis Academic Article
-
CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies Conference Paper
-
CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data Academic Article
-
Caenorhabditis elegans NONO-1: Insights into DBHS protein structure, architecture, and function Academic Article
-
Candidate effector gene identification in the ascomycete fungal phytopathogenVenturia inaequalisby expressed sequence tag analysis Academic Article
-
Characterisation and expression of an Hsp70 gene from Parastrongyloides trichosuri Academic Article
-
Chimeric antigen receptor T cells form nonclassical and potent immune synapses driving rapid cytotoxicity Academic Article
-
Comparative GO: A web application for comparative gene ontology and gene ontology-based gene selection in bacteria Academic Article
-
Comparative study of computational methods to detect the correlated reaction sets in biochemical networks Academic Article
-
Computational Characterization of 3′ Splice Variants in the GFAP Isoform Family Academic Article
-
Computational developments in microRNA-regulated protein-protein interactions Academic Article
-
Computational methods for protein interaction and structural prediction: Preface Editorial Article
-
Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer Academic Article
-
Conformational Features of Topologically Classified RNA Secondary Structures Academic Article
-
Construct optimization for studying protein complexes: obtaining diffraction-quality crystals of the pseudosymmetric PSPC1–NONO heterodimer Academic Article
-
Correlating gene and protein expression data using Correlated Factor Analysis Academic Article
-
DIA1R Is an X-Linked Gene Related to Deleted In Autism-1 Academic Article
-
DSB proteins and bacterial pathogenicity Academic Article
-
De Novo Characterisation of the Greenlip Abalone Transcriptome (Haliotis laevigata) with a Focus on the Heat Shock Protein 70 (HSP70) Family Academic Article
-
Deep Sequencing of RNA from Three Different Extracellular Vesicle (EV) Subtypes Released from the Human LIM1863 Colon Cancer Cell Line Uncovers Distinct Mirna-Enrichment Signatures Academic Article
-
Detection and validation of structural variations in bovine whole-genome sequence data Academic Article
-
Determining epithelial contribution to in vivo mesenchymal tumour expression signature using species-specific microarray profiling analysis of xenografts Academic Article
-
Dietary fat quality impacts genome-wide DNA methylation patterns in a cross-sectional study of Greek preadolescents Academic Article
-
Differential intron retention in Jumonji chromatin modifier genes is implicated in reptile temperature-dependent sex determination Academic Article
-
Dihydrodipicolinate synthase is absent in fungi Academic Article
-
Discovery of Cyclotide-Like Protein Sequences in Graminaceous Crop Plants: Ancestral Precursors of Circular Proteins? Academic Article
-
Discovery of Genes Activated by the Mitochondrial Unfolded Protein Response (mtUPR) and Cognate Promoter Elements Academic Article
-
Diversity of S-Alleles and Mate Availability in 3 Populations of Self-Incompatible Wild Pear (Pyrus pyraster) Academic Article
-
EVpedia: a community web portal for extracellular vesicles research Academic Article
-
Effective mosquito and arbovirus surveillance using metabarcoding Academic Article
-
Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples Academic Article
-
Effects of Heterogeneous and Clustered Contact Patterns on Infectious Disease Dynamics Academic Article
-
Environmental and epigenetic regulation of Rider retrotransposons in tomato Academic Article
-
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia Other Publication
-
Evaluation of Different Oligonucleotide Base Substitutions at CpG Binding sites in Multiplex Bisulfite-PCR sequencing Academic Article
-
Evidence of Evolutionary Constraints That Influences the Sequence Composition and Diversity of Mitochondrial Matrix Targeting Signals Academic Article
-
Evolution of Vertebrate Genes Related to Prion and Shadoo Proteins—Clues from Comparative Genomic Analysis Academic Article
-
Exceptionally high conservation of the MHC class I-related gene, MR1, among mammals Academic Article
-
Exosomes Derived from Human Primary and Metastatic Colorectal Cancer Cells Contribute to Functional Heterogeneity of Activated Fibroblasts by Reprogramming Their Proteome Academic Article
-
Experimental Analysis of the Arabidopsis Mitochondrial Proteome Highlights Signaling and Regulatory Components, Provides Assessment of Targeting Prediction Programs, and Indicates Plant-Specific Mitochondrial Proteins Academic Article
-
Exploring Cross-Species-Related miRNAs Based on Sequence and Secondary Structure Academic Article
-
Exploring consensus RNA substructural patterns using subgraph mining Academic Article
-
Exploring the ncRNA–ncRNA patterns based on bridging rules Academic Article
-
Extraction of high quality k-words for alignment-free sequence comparison Academic Article
-
Finding rule groups to classify high dimensional gene expression datasets Academic Article
-
FunRich: An open access standalone functional enrichment and interaction network analysis tool Academic Article
-
GWIS - model-free, fast and exhaustive search for epistatic interactions in case-control GWAS Academic Article
-
Gene expression in diplosporous and sexual Eragrostis curvula genotypes with differing ploidy levels Academic Article
-
Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil Academic Article
-
Genome-Wide Association Scan Identifies a Risk Locus for Preeclampsia on 2q14, Near the Inhibin, Beta B Gene Academic Article
-
Genome-wide SNP identification in multiple morphotypes of allohexaploid tall fescue (Festuca arundinacea Schreb) Academic Article
-
Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus Academic Article
-
Germline viral "fossils" guide in silico Ereconstruction of a mid-Cenozoic era marsupial adeno-associated virus Academic Article
-
Grouping miRNAs of similar functions via weighted information content of gene ontology Academic Article
-
Guest Editorial for the 12th Asia Pacific Bioinformatics Conference Editorial Article
-
Guest Editorial for the 13th Asia Pacific Bioinformatics Conference Academic Article
-
Guest Editorial for the 14th Asia Pacific Bioinformatics Conference (APBC2016) Editorial Article
-
Guest Editorial: Advanced Algorithms of Bioinformatics Editorial Article
-
Guest Editorial: Application and Development of Bioinformatics Editorial Article
-
Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans Academic Article
-
Human metabolomics reveal daily variations under nutritional challenges specific to serum and skeletal muscle Academic Article
-
IDENTIFYING CO-REGULATING MICRORNA GROUPS Academic Article
-
Identification of candidate flowering and sex genes in white Guinea yam (D. Rotundata Poir.) by SuperSAGE transcriptome profiling Academic Article
-
Identification of protein complexes by integrating multiple alignment of protein interaction networks Academic Article
-
Identifying Interactions Between Long Noncoding RNAs and Diseases Based on Computational Methods Chapter
-
Identifying mutation positions in all segments of influenza genome enables better differentiation between pandemic and seasonal strains Academic Article
-
Identifying targets for drug discovery using bioinformatics Academic Article
-
Illumina WG-6 BeadChip strips should be normalized separately Academic Article
-
Implementation and applications of EMOD, an individual-based multi-disease modeling platform Academic Article
-
Inferring microRNA-environmental factor interactions based on multiple biological information fusion Academic Article
-
Information Integration in Molecular Bioscience Academic Article
-
Insight into the self-association of key enzymes from pathogenic species Academic Article
-
Insights into respiratory disease through bioinformatics Academic Article
-
Insights into the Immunological Properties of Intrinsically Disordered Malaria Proteins Using Proteome Scale Predictions Academic Article
-
Insulin mediated activation of PI3K/Akt signalling pathway modifies the proteomic cargo of extracellular vesicles Academic Article
-
International Journal of Bioinformatics Research and Applications: Editorial Academic Article
-
Interval-based distance function for identifying RNA structure candidates Academic Article
-
Isolation and in silico functional analysis of MtATP6, a 6-kDa subunit of mitochondrial F1F0-ATP synthase, in response to abiotic stress Academic Article
-
Joint estimation of isoform expression and isoform-specific read distribution using multisample RNA-Seq data Academic Article
-
K-Partite cliques of protein interactions: a novel subgraph topology for functional coherence analysis on PPI networks Academic Article
-
KSIMC: Predicting kinase–Substrate interactions based on matrix completion Academic Article
-
Knockdown of stem cell regulator Oct4A in ovarian cancer reveals cellular reprogramming associated with key regulators of cytoskeleton-extracellular matrix remodelling Academic Article
-
Label-based and label-free strategies for protein quantitation Chapter
-
Linear ubiquitin chain assembly complex coordinates late thymic T-cell differentiation and regulatory T-cell homeostasis Academic Article
-
MERP1: a mammalian ependymin-related protein gene differentially expressed in hematopoietic cells Academic Article
-
MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences Academic Article
-
Machine learning based classification of microsatellite variation: An effective approach for phylogeographic characterization of olive populations Academic Article
-
Marsupial and Monotreme Genomes Academic Article
-
Mean-field models for non-Markovian epidemics on networks Academic Article
-
Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems Academic Article
-
Metagenomic arbovirus detection using MinION nanopore sequencing Academic Article
-
MidA is a putative methyltransferase that is required for mitochondrial complex I function Academic Article
-
Mining Characteristic Relations Bind to RNA Secondary Structures Conference Paper
-
Mining a Tandem Mass Spectrometry Database To Determine the Trends and Global Factors Influencing Peptide Fragmentation Academic Article
-
Mining featured patterns of MiRNA interaction based on sequence and structure similarity Academic Article
-
Modelling the structure of the fusion protein from human respiratory syncytial virus Academic Article
-
Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample Academic Article
-
Molecular characterisation and genetic mapping of candidate genes for qualitative disease resistance in perennial ryegrass (Lolium perenne L.) Academic Article
-
Molecular characterisation of a novel pathogenic avipoxvirus from the Australian magpie (Gymnorhina tibicen) Academic Article
-
Multi-omic data analysis using Galaxy Academic Article
-
Mutation@A Glance: An Integrative Web Application for Analysing Mutations from Human Genetic Diseases Academic Article
-
Neoadjuvant neratinib promotes ferroptosis and inhibits brain metastasis in a novel syngeneic model of spontaneous HER2(+ve) breast cancer metastasis Academic Article
-
NetPath: a public resource of curated signal transduction pathways Academic Article
-
Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells Academic Article
-
Network tools for the analysis of proteomic data Chapter
-
Next-generation sequencing in health-care delivery: Lessons from the functional analysis of rhodopsin Academic Article
-
Nonlinear Predictive Modeling of MHC Class II-Peptide Binding Using Bayesian Neural Networks Academic Article
-
Nonsense Mediated Decay Resistant Mutations Are a Source of Expressed Mutant Proteins in Colon Cancer Cell Lines with Microsatellite Instability Academic Article
-
Optimisation of Milk Protein Top-Down Sequencing Using In-Source Collision-Induced Dissociation in the Maxis Quadrupole Time-of-Flight Mass Spectrometer Academic Article
-
Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database Academic Article
-
PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites Academic Article
-
PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy Academic Article
-
PathBuilder—open source software for annotating and developing pathway resources Academic Article
-
Plant Mitochondrial Transcriptomics by Quantitative RT-PCR Academic Article
-
Plasma Proteome Database as a resource for proteomics research Academic Article
-
Platelet-Derived Growth Factor Receptor Beta: A Novel Urinary Biomarker for Recurrence of Non-Muscle-Invasive Bladder Cancer Academic Article
-
Post-genomic nematode parasitology Academic Article
-
Potent Agonists of a Hematopoietic Stem Cell Cytokine Receptor, c-Mpl Academic Article
-
Potential epigenetic regulatory proteins localise to distinct nuclear sub-compartments in Plasmodium falciparum Academic Article
-
Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network Academic Article
-
Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features Academic Article
-
Predicting serpin/protease interactions Academic Article
-
Prediction of Candidate Primary Immunodeficiency Disease Genes Using a Support Vector Machine Learning Approach Academic Article
-
Prediction of key regulators and downstream targets of E. coli induced mastitis Academic Article
-
Prediction of pre-miRNA with multiple stem-loops using pruning algorithm Academic Article
-
ProBAPred: Inferring protein-protein binding affinity by incorporating protein sequence and structural features Academic Article
-
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance Academic Article
-
Proteomic identification of divalent metal cation binding proteins in plant mitochondria Academic Article
-
Proteotypic peptides and their applications Chapter
-
Quantitative analysis of exosomal miRNA via qPCR and digital PCR Chapter
-
Quarantine Regulations and the Impact of Modern Detection Methods Chapter
-
Riding the Spermatogenic Wave: Profiling Gene Expression Within Neonatal Germ and Sertoli Cells During a Synchronized Initial Wave of Spermatogenesis in Mice Academic Article
-
Role of Plasmepsin V in Export of Diverse Protein Families from the Plasmodium falciparum Exportome Academic Article
-
Seasonality in risk of pandemic influenza
emergence Academic Article
-
Semantically predicting protein functions based on protein functional connectivity Academic Article
-
Short read alignment using SOAP2 Chapter
-
Somatic proteome of Haemonchus contortus Academic Article
-
SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction Academic Article
-
StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations Academic Article
-
Statistical evaluation of labeled comparative profiling proteomics experiments using permutation test Chapter
-
Stem cell decision making and critical-like exploratory networks Academic Article
-
Structural and Dynamic Requirements for Optimal Activity of the Essential Bacterial Enzyme Dihydrodipicolinate Synthase Academic Article
-
Structural, kinetic and computational investigation of Vitis vinifera DHDPS reveals new insight into the mechanism of lysine-mediated allosteric inhibition Academic Article
-
Structure of the tetrameric form of human L-Xylulose reductase: Probing the inhibitor-binding site with molecular modeling and site-directed mutagenesis Academic Article
-
Structure-based drug design to augment hit discovery Academic Article
-
Studies of χ(2)/χ(3) Tensors in Submicron-Scaled Bio-Tissues by Polarization Harmonics Optical Microscopy Academic Article
-
Supercomputing enabling exhaustive statistical analysis of genome wide association study data: Preliminary results Conference Paper
-
Systematic identification of immunodominant CD8+ T-cell responses to influenza A virus in HLA-A2 individuals Academic Article
-
Systems analysis identifies miR-29b regulation of invasiveness in melanoma Academic Article
-
Targeted mining of drought stress-responsive genes from EST resources in Cleistogenes songorica Academic Article
-
The Assembly of Individual Chaplin Peptides from Streptomyces coelicolor into Functional Amyloid Fibrils Academic Article
-
The CELLULOSE-SYNTHASE LIKE C (CSLC) Family of Barley Includes Members that Are Integral Membrane Proteins Targeted to the Plasma Membrane Academic Article
-
The Genome 10K Project : A Way Forward. Academic Article
-
The Status of Dosage Compensation in the Multiple X Chromosomes of the Platypus Academic Article
-
The Tenth Asia Pacific Bioinformatics Conference (APBC 2012) Conference Paper
-
Toward a systematic exploration of nano-bio interactions Academic Article
-
Transcriptome analysis of Neotyphodium and Epichloë grass endophytes Academic Article
-
Transcriptomic Coordination in the Human Metabolic Network Reveals Links between n-3 Fat Intake, Adipose Tissue Gene Expression and Metabolic Health Academic Article
-
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Academic Article
-
Unassigned MS/MS spectra: Who Am I? Chapter
-
Understanding the underlying mechanism of HA-subtyping in the level of physic-chemical characteristics of protein Academic Article
-
Unique ability of pandemic influenza to downregulate the genes involved in neuronal disorders Academic Article
-
Using Bioinformatics Techniques for Gene Identification in Drug Discovery and Development Academic Article
-
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set Academic Article