subject area of

• 1000 Bull Genomes Project to Map Simple and Complex Genetic Traits in Cattle: applications and Outcomes  Academic Article
• A computationally efficient algorithm for genomic prediction using a Bayesian model  Academic Article
• A draft genome sequence of the elusive giant squid, Architeuthis dux  Academic Article
• A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map  Academic Article
• A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease  Academic Article
• A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery  Academic Article
• A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes  Academic Article
• A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: Application to Arabidopsis  Academic Article
• A pHMM-ANN based discriminative approach to promoter identification in prokaryote genomic contexts  Academic Article
• Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes  Academic Article
• Accounting for dominance to improve genomic evaluations of dairy cows for fertility and milk production traits  Academic Article
• Accuracy of genotype imputation based on random and selected reference sets in purebred and crossbred sheep populations and its effect on accuracy of genomic prediction  Academic Article
• Accurate and robust genomic prediction of Celiac disease using statistical learning  Academic Article
• Across-country genomic prediction of bull fertility in Jersey dairy cattle  Academic Article
• An Accessible Proteogenomics Informatics Resource for Cancer Researchers  Academic Article
• An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function  Academic Article
• Analysis of pooled genome sequences from Djallonke and Sahelian sheep of Ghana reveals co-localisation of regions of reduced heterozygosity with candidate genes for disease resistance and adaptation to a tropical environment  Academic Article
• Ancient Antimicrobial Peptides Kill Antibiotic-Resistant Pathogens: Australian Mammals Provide New Options  Academic Article
• Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity  Academic Article
• Apoptosis in schistosomes: toward novel targets for the treatment of schistosomiasis  Academic Article
• Application of a Bayesian non-linear model hybrid scheme to sequence data for genomic prediction and QTL mapping  Academic Article
• Appraisal of the technologies and review of the genomic landscape of ductal carcinoma in situ of the breast  Academic Article
• Approaches to functional genomics in filamentous fungi  Academic Article
• Athlome Project Consortium: a concerted effort to discover genomic and other “omic” markers of athletic performance  Academic Article
• BASC: an integrated bioinformatics system for Brassica research  Academic Article
• Brassica ASTRA: an integrated database for Brassica genomic research  Academic Article
• Breast tumour organoids: promising models for the genomic and functional characterisation of breast cancer  Academic Article
• CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data  Academic Article
• Can whole genome analysis refine the taxonomy of the genusRhodococcus?  Academic Article
• Cancer proteomics: from signaling networks to tumor markers  Academic Article
• Cellulose Synthase-Like CslF Genes Mediate the Synthesis of Cell Wall (1,3;1,4)- -D-Glucans  Academic Article
• Chromosomics: Bridging the Gap between Genomes and Chromosomes  Academic Article
• Colorectal cancer atlas: an integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues  Academic Article
• Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection  Academic Article
• Comparative analysis of structural variations due to genome shuffling of Bacillus Subtilis vs15 for improved cellulase production  Academic Article
• Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range  Academic Article
• Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages  Academic Article
• Comparison of similarity-based tests and pooling strategies for rare variants  Academic Article
• Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process  Academic Article
• Concepts Collide: Genomic, Immune, and Microbial Influences on the Tumor Microenvironment and Response to Cancer Therapy  Academic Article
• Coupled genomic evolutionary histories as signatures of organismal innovations in cephalopods: co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of cephalopod novelties  Academic Article
• Crocodilepox Virus Evolutionary Genomics Supports Observed Poxvirus Infection Dynamics on Saltwater Crocodile (Crocodylus porosus)  Academic Article
• Cross-disciplinarity in the advance of Antarctic ecosystem research  Academic Article
• Databases and informatics resources for analysis of plant mitochondria  Chapter
• De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read  Academic Article
• Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracy  Academic Article
• Detection and validation of structural variations in bovine whole-genome sequence data  Academic Article
• Dissecting a Genomic Role of BDNF in Schizophrenia and Psychosis  Academic Article
• EST-SNP discovery and dense genetic mapping in lentil (Lens culinaris Medik.) enable candidate gene selection for boron tolerance  Academic Article
• Estimation of genomic breeding values for residual feed intake in a multibreed cattle population1  Academic Article
• Evolution of Vertebrate Genes Related to Prion and Shadoo Proteins—Clues from Comparative Genomic Analysis  Academic Article
• Exome sequence genotype imputation in globally diverse hexaploid wheat accessions  Academic Article
• Exploitation of data from breeding programs supports rapid implementation of genomic selection for key agronomic traits in perennial ryegrass  Academic Article
• FeatureCounts: an efficient general purpose program for assigning sequence reads to genomic features  Academic Article
• FlashPCA2: principal component analysis of Biobank-scale genotype datasets  Other Publication
• Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia  Academic Article
• FunRich: An open access standalone functional enrichment and interaction network analysis tool  Academic Article
• Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap  Academic Article
• Functional and genomic characterisation of a xenograft model system for the study of metastasis in triple-negative breast cancer  Academic Article
• Functional genomics approaches in parasitic helminths  Academic Article
• GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly  Academic Article
• GSE’s 50th anniversary: where do we go from now?  Academic Article
• Gene ontology-based analysis of zebrafish omics data using the web tool Comparative Gene Ontology  Academic Article
• Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits  Academic Article
• Genetic evaluation of gestation length and its use in managing calving patterns  Academic Article
• Genetic variants in mammary development, prolactin signalling and involution pathways explain considerable variation in bovine milk production and milk composition  Academic Article
• Genetics and genomics of reproductive performance in dairy and beef cattle  Academic Article
• Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species  Academic Article
• Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences  Academic Article
• Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array  Academic Article
• Genome-Enabled Estimates of Additive and Nonadditive Genetic Variances and Prediction of Apple Phenotypes Across Environments  Academic Article
• Genome-wide analysis of alternative splicing events in Hordeum vulgare : Highlighting retention of intron-based splicing and its possible function through network analysis  Academic Article
• Genome-wide association studies and systems biology: together at last  Academic Article
• Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea  Academic Article
• Genomic Literacy of Registered Nurses and Midwives in Australia: A Cross‐Sectional Survey  Academic Article
• Genomic Risk Prediction of Coronary Artery Disease in 480,000 Adults: Implications for Primary Prevention  Academic Article
• Genomic analysis of circulating tumor DNA using a melanoma-specific UltraSEEK oncogene panel  Academic Article
• Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus  Academic Article
• Genomic analysis reveals variant association with high altitude adaptation in native chickens  Academic Article
• Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge  Academic Article
• Genomic and metabolic characterisation of alkaloid biosynthesis by asexual Epichloë fungal endophytes of tall fescue pasture grasses  Academic Article
• Genomic diversity and admixture differs for stone-age Scandinavian foragers and farmers  Academic Article
• Genomic evidence establishes Anatolia as the source of the European Neolithic gene pool  Academic Article
• Genomic evidence for the Pleistocene and recent population history of Native Americans  Academic Article
• Genomic insights into the carbohydrate catabolism of Cairneyella variabilis gen. nov. sp. nov., the first reports from a genome of an ericoid mycorrhizal fungus from the southern hemisphere  Academic Article
• Genomic prediction based on selected variants from imputed whole-genome sequence data in Australian sheep populations  Academic Article
• Genomic prediction for rust resistance in diverse wheat landraces  Academic Article
• Genomic prediction of coronary heart disease  Academic Article
• Genomic prediction of dry matter intake in dairy cattle from an international data set consisting of research herds in Europe, North America, and Australasia  Academic Article
• Genomic prediction of reproduction traits for Merino sheep  Academic Article
• Genomic prediction of serum biomarkers of health in early lactation  Academic Article
• Genomic risk prediction of complex human disease and its clinical application  Academic Article
• Genomic risk score offers predictive performance comparable to clinical risk factors for ischaemic stroke  Academic Article
• Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli  Academic Article
• Genomic, morphological and functional characterisation of novel bacteriophage FNU1 capable of disrupting Fusobacterium nucleatum biofilms  Academic Article
• Genotype imputation to improve the cost-efficiency of genomic selection in farmed Atlantic salmon  Academic Article
• Geno‐Diver: A combined coalescence and forward‐in‐time simulator for populations undergoing selection for complex traits  Academic Article
• Glioma through the looking GLASS: molecular evolution of diffuse gliomas and the Glioma Longitudinal Analysis Consortium  Academic Article
• Guest Editorial for the 13th Asia Pacific Bioinformatics Conference  Academic Article
• High density array screening to identify the genetic requirements for transition metal tolerance in Saccharomyces cerevisiae  Academic Article
• Human protein reference database--2006 update  Academic Article
• I digress Why sex?  Academic Article
• Identification and Validation of Oncogenes in Liver Cancer Using an Integrative Oncogenomic Approach  Academic Article
• Identification of candidate cancer drivers by integrative Epi-DNA and Gene Expression (iEDGE) data analysis  Academic Article
• Identification of recurrent regions of copy-number variants across multiple individuals  Academic Article
• Improved accuracy of genomic prediction for dry matter intake of dairy cattle from combined European and Australian data sets  Academic Article
• Including overseas performance information in genomic evaluations of Australian dairy cattle  Academic Article
• Insights into Bacterial Genome Composition through Variable Target GC Content Profiling  Academic Article
• Insights into respiratory disease through bioinformatics  Academic Article
• Introduction to the special issue on GIW 2016  Editorial Article
• Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle  Academic Article
• Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability  Academic Article
• Is a gene-centric human proteome project the best way for proteomics to serve biology?  Academic Article
• LC-MS profiling to link metabolic and phenotypic diversity in plant mapping populations  Chapter
• Lipidomic analyses in epidemiology  Academic Article
• Lymphocytic response to tumour and deficient DNA mismatch repair identify subtypes of stage II/III colorectal cancer associated with patient outcomes  Academic Article
• Marsupial and Monotreme Genomes  Academic Article
• Marsupial genetics and genomics  Academic Article
• Marsupial genomics meet marsupial reproduction  Academic Article
• Marsupials and monotremes sort genome treasures from junk  Academic Article
• Marsupials in the Age of Genomics  Academic Article
• Meta-analysis of Grainyhead-like dependent transcriptional networks: A roadmap for identifying novel conserved genetic pathways  Academic Article
• Metabolic classification of microbial genomes using functional probes  Academic Article
• Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample  Academic Article
• Molecular characterisation and genetic mapping of candidate genes for qualitative disease resistance in perennial ryegrass (Lolium perenne L.)  Academic Article
• Molecular characterisation of a novel pathogenic avipoxvirus from the Australian magpie (Gymnorhina tibicen)  Academic Article
• Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world’s largest living member of the Crocodylia  Academic Article
• Multimorbidity: a sociological perspective of systems  Academic Article
• Multiple-trait QTL mapping and genomic prediction for wool traits in sheep  Academic Article
• Next-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapa  Academic Article
• Nurses’ competence in genetics: An integrative review  Academic Article
• On the value of the phenotypes in the genomic era  Academic Article
• One hundred mitochondrial genomes of cicadas  Academic Article
• Opportunities and challenges in long-read sequencing data analysis  Academic Article
• Optimizing genomic prediction for Australian Red dairy cattle  Academic Article
• Overview on the Analytical Tools for Quality Control of Natural Product-Based Supplements: A Case Study of Ginseng  Academic Article
• Pan-cancer analysis of whole genomes  Academic Article
• Plant cell wall biosynthesis: genetic, biochemical and functional genomics approaches to the identification of key genes  Academic Article
• Post-Genomic Approaches to Understanding Malaria Parasite Biology: Linking Genes to Biological Functions  Academic Article
• Potential therapeutic targets and the role of technology in developing novel antileishmanial drugs  Academic Article
• Precision nomenclature for the new genomics  Academic Article
• Proteogenomic Analysis of the Venturia pirina (Pear Scab Fungus) Secretome Reveals Potential Effectors  Academic Article
• Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries  Academic Article
• Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits  Academic Article
• QTL analysis and comparative genomics of herbage quality traits in perennial ryegrass (Lolium perenne L.)  Academic Article
• Quantitative Trait Locus (QTL) meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.)  Academic Article
• Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species  Academic Article
• Realising the Value of Linked Data to Health Economic Analyses of Cancer Care: A Case Study of Cancer 2015  Academic Article
• Reference exome data for Australian Aboriginal populations to support health-based research  Academic Article
• Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle  Academic Article
• Rice DB : an O ryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and A rabidopsis  Academic Article
• Selection on Optimal Haploid Value Increases Genetic Gain and Preserves More Genetic Diversity Relative to Genomic Selection  Academic Article
• Short communication: Validation of genomic breeding value predictions for feed intake and feed efficiency traits  Academic Article
• Short read alignment using SOAP2  Chapter
• SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction  Academic Article
• Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma  Academic Article
• SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs  Academic Article
• Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus  Academic Article
• Subdividing globally important zones based on data distribution across multiple genome fragments  Academic Article
• Symposium review: Building a better cow—The Australian experience and future perspectives1  Academic Article
• The First Cytogenetic Map of the Tuatara, Sphenodon punctatus  Academic Article
• The Genome 10K Project : A Way Forward.  Academic Article
• The Subread aligner: Fast, accurate and scalable read mapping by seed-and-vote  Academic Article
• The Tree of Life: View from a Twig  Academic Article
• The ancestry and affiliations of Kennewick Man  Academic Article
• The chicken embryo as a model for developmental endocrinology: Development of the thyrotropic, corticotropic, and somatotropic axes  Academic Article
• The diploid genome sequence of an Asian individual  Academic Article
• The genomic basis of parasitism in the Strongyloides clade of nematodes  Academic Article
• The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes  Academic Article
• The kangaroo genome  Academic Article
• The prion protein gene: Identifying regulatory signals using marsupial sequence  Academic Article
• Transcriptome profiling of bacterial responses to root exudates identifies genes involved in microbe-plant interactions  Academic Article
• Tri-mean-based statistical differential gene expression detection  Academic Article
• Underlying functional genomics of fat deposition in adipose tissue  Academic Article
• Understanding extracellular vesicle diversity – current status  Academic Article
• Using Genomic Resources to Guide Research Directions. The Arabinogalactan Protein Gene Family as a Test Case  Academic Article
• Using genomics to enhance selection of novel traits in North American dairy cattle  Academic Article
• Utilizing genomic analyses to investigate the first outbreak of van A vancomycin-resistant enterococcus in Australia with emergence of daptomycin non-susceptibility  Academic Article
• Value of sharing cow reference population between countries on reliability of genomic prediction for milk yield traits  Academic Article
• Weird Animals, Sex, and Genome Evolution  Academic Article
• Zebularine treatment is associated with deletion of FT-B1 leading to an increase in spikelet number in bread wheat  Academic Article
• bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)  Academic Article