subject area of

• A HUPO test sample study reveals common problems in mass spectrometry–based proteomics  Academic Article
• A Multiple Protease Strategy to Optimise the Shotgun Proteomics of Mature Medicinal Cannabis Buds  Academic Article
• A Transcriptomic and Proteomic Characterization of the Arabidopsis Mitochondrial Protein Import Apparatus and Its Response to Mitochondrial Dysfunction  Academic Article
• A centrifugal ultrafiltration strategy for isolating the low-molecular weight (≤25K) component of human plasma proteome  Academic Article
• A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda)  Academic Article
• A common open representation of mass spectrometry data and its application to proteomics research  Academic Article
• A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease  Academic Article
• A novel ex vivo immunoproteomic approach characterising Fasciola hepatica tegumental antigens identified using immune antibody from resistant sheep  Academic Article
• A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani  Academic Article
• A proteomic approach for unraveling the oncogenic H-Ras protein networks in NIH/3T3 mouse embryonic fibroblast cells  Academic Article
• A protocol for exosome isolation and characterization: evaluation of ultracentrifugation, density-gradient separation, and immunoaffinity capture methods.  Chapter
• A protocol for isolation and proteomic characterization of distinct extracellular vesicle subtypes by sequential centrifugal ultrafiltration  Chapter
• A protocol for the preparation of cryoprecipitate and cryo-depleted plasma for proteomic studies  Chapter
• Accessory subunits are integral for assembly and function of human mitochondrial complex I  Academic Article
• Advances in the development of human protein microarrays  Academic Article
• An Accessible Proteogenomics Informatics Resource for Cancer Researchers  Academic Article
• An Introduction to Proteome Bioinformatics  Chapter
• An Isolated Complex V Inefficiency and Dysregulated Mitochondrial Function in Immortalized Lymphocytes from ME/CFS Patients  Academic Article
• An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis  Academic Article
• An updated secretome  Academic Article
• Analysis of Ras-induced oncogenic transformation of NIH-3T3 cells using differential-display 2-DE proteomics  Academic Article
• Ankyrin Repeat and Suppressors of Cytokine Signaling Box Protein Asb-9 Targets Creatine Kinase B for Degradation  Academic Article
• Application of 2-D free-flow electrophoresis/RP-HPLC for proteomic analysis of human plasma depleted of multi high-abundance proteins  Academic Article
• Approaches to functional genomics in filamentous fungi  Academic Article
• Asparagus IRX9, IRX10, and IRX14A Are Components of an Active Xylan Backbone Synthase Complex that Forms in the Golgi Apparatus  Academic Article
• Bovine milk-derived exosomes from colostrum are enriched with proteins implicated in immune response and growth  Academic Article
• CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies  Conference Paper
• CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data  Academic Article
• Characterization of the low-molecular-weight human plasma peptidome  Chapter
• Colon tumour secretopeptidome: Insights into endogenous proteolytic cleavage events in the colon tumour microenvironment  Academic Article
• Colorectal cancer atlas: an integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues  Academic Article
• Colorectal cancer cell line proteomes are representative of primary tumors and predict drug sensitivity  Academic Article
• Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus  Academic Article
• Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis  Academic Article
• Comparative Proteomic Analysis of Slime from the Striped Pyjama Squid, Sepioloidea lineolata, and the Southern Bottletail Squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae)  Academic Article
• Comparative proteome analysis of the strawberry-Fusarium oxysporum f. sp. fragariae pathosystem reveals early activation of defense responses as a crucial determinant of host resistance  Academic Article
• Comparative proteomics evaluation of plasma exosome isolation techniques and assessment of the stability of exosomes in normal human blood plasma  Academic Article
• Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes  Academic Article
• Comprehensive proteomic analysis of human bile  Academic Article
• Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process  Academic Article
• Databases and informatics resources for analysis of plant mitochondria  Chapter
• Deciphering the electric code of Geobacter sulfurreducens in cocultures with Pseudomonas aeruginosa via SWATH-MS proteomics  Academic Article
• Detection and Mapping of Widespread Intermolecular Protein Disulfide Formation during Cardiac Oxidative Stress Using Proteomics with Diagonal Electrophoresis  Academic Article
• Detection of cadherin-17 in human colon cancer LIM1215 cell secretome and tumour xenograft-derived interstitial fluid and plasma  Academic Article
• Differential accumulation of soluble proteins in roots of metallicolous and nonmetallicolous populations of Agrostis capillaris L. exposed to Cu  Academic Article
• Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics  Academic Article
• EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data  Academic Article
• Enhanced Analysis of the Mouse Plasma Proteome Using Cysteine-Containing Tryptic Glycopeptides  Academic Article
• Enhanced growth of pilin-deficient Geobacter sulfurreducens mutants in carbon poor and electron donor limiting conditions  Academic Article
• Enrichment of Human Platelet Membranes for Proteomic Analysis  Academic Article
• Evaluation of Urine Proteome Pattern Analysis for Its Potential To Reflect Coronary Artery Atherosclerosis in Symptomatic Patients  Academic Article
• Exosomes Derived from Human Primary and Metastatic Colorectal Cancer Cells Contribute to Functional Heterogeneity of Activated Fibroblasts by Reprogramming Their Proteome  Academic Article
• Exosomes in bodily fluids are a highly stable resource of disease biomarkers  Academic Article
• Exosomes: proteomic insights and diagnostic potential  Academic Article
• Exploiting New Systems-Based Strategies to Elucidate Plant-Bacterial Interactions in the Rhizosphere  Academic Article
• Exploring the Fasciola hepatica tegument proteome  Academic Article
• Extracellular vesicles secreted by Saccharomyces cerevisiae are involved in cell wall remodelling  Academic Article
• Finding the keys to the CAR: Identifying novel target antigens for t cell redirection immunotherapies  Academic Article
• From genome to proteome--aim of human proteomics  Academic Article
• FunRich: An open access standalone functional enrichment and interaction network analysis tool  Academic Article
• Fungal extracellular vesicles with a focus on proteomic analysis  Academic Article
• Gene ontology-based analysis of zebrafish omics data using the web tool Comparative Gene Ontology  Academic Article
• Genetic variation among lambs in peripheral IgE activity against the larval stages ofTeladorsagia circumcincta  Academic Article
• Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry  Academic Article
• Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1  Academic Article
• Guidelines for the next 10 years of proteomics  Academic Article
• Helicobacter pylori Growth Stage Determines the Size, Protein Composition, and Preferential Cargo Packaging of Outer Membrane Vesicles  Academic Article
• Histopathological effect and stress response of mantle proteome following TBT exposure in the Hooded oyster Saccostrea cucullata  Academic Article
• Human Microglial Cells Synthesize Albumin in Brain  Academic Article
• Human Protein Reference Database--2009 update  Academic Article
• Human Proteinpedia as a Resource for Clinical Proteomics  Academic Article
• Human Proteinpedia enables sharing of human protein data  Academic Article
• Human Proteinpedia: a unified discovery resource for proteomics research  Academic Article
• Human protein reference database--2006 update  Academic Article
• Identification and validation of novel candidate protein biomarkers for the detection of human gastric cancer  Academic Article
• Identification of a Wnt-induced protein complex by affinity proteomics using an antibody that recognizes a sub-population of β-catenin  Academic Article
• Identification of intra- and intermolecular disulphide bonding in the plant mitochondrial proteome by diagonal gel electrophoresis  Academic Article
• Identification of mammalian mitochondrial proteins that interact with IAPs via N-terminal IAP binding motifs  Academic Article
• Implementation of proteomic biomarkers: making it work  Academic Article
• Increased Abundance of Proteins Involved in Phytosiderophore Production in Boron-Tolerant Barley  Academic Article
• Increased collagen within the transverse tubules in human heart failure  Academic Article
• Inhibition of cathepsin proteases attenuates migration and sensitizes aggressive N-Myc amplified human neuroblastoma cells to doxorubicin  Academic Article
• Insights into the Immunological Properties of Intrinsically Disordered Malaria Proteins Using Proteome Scale Predictions  Academic Article
• Insulin mediated activation of PI3K/Akt signalling pathway modifies the proteomic cargo of extracellular vesicles  Academic Article
• Integrated comparison of GWAS, transcriptome, and proteomics studies highlights similarities in the biological basis of animal and human myopia  Academic Article
• Integrated multi-omics framework of the plant response to jasmonic acid  Academic Article
• Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.)  Academic Article
• Is a gene-centric human proteome project the best way for proteomics to serve biology?  Academic Article
• Isolation of extracellular membranous vesicles for proteomic analysis  Chapter
• Knockdown of stem cell regulator Oct4A in ovarian cancer reveals cellular reprogramming associated with key regulators of cytoskeleton-extracellular matrix remodelling  Academic Article
• Label-based and label-free strategies for protein quantitation  Chapter
• Large oncosomes contain distinct protein cargo and represent a separate functional class of tumor-derived extracellular vesicles  Academic Article
• Lipoic Acid-Dependent Oxidative Catabolism of α-Keto Acids in Mitochondria Provides Evidence for Branched-Chain Amino Acid Catabolism in Arabidopsis  Academic Article
• Liquid-based free-flow electrophoresis–reversed-phase HPLC: a proteomic tool  Academic Article
• Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature  Academic Article
• MALDI-TOF mass spectrometry proteomic based identification of clinical bacterial isolates  Academic Article
• Macromolecular composition of phloem exudate from white lupin (Lupinus albus L.)  Academic Article
• Metabolic classification of microbial genomes using functional probes  Academic Article
• Molecular profiling of cetuximab and bevacizumab treatment of colorectal tumours reveals perturbations in metabolic and hypoxic response pathways  Academic Article
• Multi-omic data analysis using Galaxy  Academic Article
• N-terminal isotope tagging with propionic anhydride: Proteomic analysis of myogenic differentiation of C2C12 cells  Academic Article
• Naturally Occurring Human Urinary Peptides for Use in Diagnosis of Chronic Kidney Disease  Academic Article
• Network tools for the analysis of proteomic data  Chapter
• Oncogenic epithelial cell-derived exosomes containing Rac1 and PAK2 induce angiogenesis in recipient endothelial cells  Academic Article
• Online quantitative proteomics p -value calculator for permutation-based statistical testing of peptide ratios  Academic Article
• Optimisation of Milk Protein Top-Down Sequencing Using In-Source Collision-Induced Dissociation in the Maxis Quadrupole Time-of-Flight Mass Spectrometer  Academic Article
• Optimisation of protein extraction from medicinal Cannabis mature buds for bottom-up proteomics  Academic Article
• Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database  Academic Article
• Plant glycosylphosphatidylinositol anchored proteins at the plasma membrane-cell wall nexus  Academic Article
• Plasma Proteome Database as a resource for proteomics research  Academic Article
• Plasma Proteome Database as a resource for proteomics research: 2014 update  Academic Article
• Plasma proteomic analysis in obese and overweight prepubertal children  Academic Article
• Post-Genomic Approaches to Understanding Malaria Parasite Biology: Linking Genes to Biological Functions  Academic Article
• Post-translational and transcriptional dynamics–regulating  extracellular vesicle biology  Academic Article
• Prediction of acute coronary syndromes by urinary proteome analysis  Academic Article
• Preliminary validation of a high docosahexaenoic acid (DHA) and -linolenic acid (ALA) dietary oil blend: Tissue fatty acid composition and liver proteome response in Atlantic Salmon (Salmo salar) smolts  Academic Article
• Protein systems biology: Method, regulation, and networks  Academic Article
• Proteogenomic Analysis Identifies a Novel Human SHANK3 Isoform  Academic Article
• Proteogenomic Analysis of the Venturia pirina (Pear Scab Fungus) Secretome Reveals Potential Effectors  Academic Article
• Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry  Academic Article
• Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes  Academic Article
• Proteomic Insights into Endometrial Receptivity and Embryo‐Endometrial Epithelium Interaction for Implantation Reveal Critical Determinants of Fertility  Academic Article
• Proteomic Profiling of the Epithelial-Mesenchymal Transition Using 2D DIGE  Chapter
• Proteomic analysis of colorectal cancer: discovering novel biomarkers  Academic Article
• Proteomic and Carbonylation Profile Analysis at the Critical Node of Seed Ageing in Oryza sativa  Academic Article
• Proteomic and Metabolic Profiling of Rice Suspension Culture Cells as a Model to Study Abscisic Acid Signaling Response Pathways in Plants  Academic Article
• Proteomic and Post‐Translational Modification Profiling of Exosome‐Mimetic Nanovesicles Compared to Exosomes  Academic Article
• Proteomic changes during intestinal cell maturation in vivo  Academic Article
• Proteomic comparison of 3D and 2D glioma models reveals increased HLA-E expression in 3D models is associated with resistance to NK cell-mediated cytotoxicity  Academic Article
• Proteomic data storage and sharing  Chapter
• Proteomic identification of galectin-11 and -14 ligands from Fasciola hepatica  Academic Article
• Proteomic identification of interferon-induced proteins with tetratricopeptide repeats as markers of M1 macrophage polarization  Academic Article
• Proteomic insights into extracellular vesicle biology - defining exosomes and shed microvesicles  Academic Article
• Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field  Academic Article
• Proteomic profiling of exosomes secreted by breast cancer cells with varying metastatic potential  Academic Article
• Proteomic profiling of exosomes: Current perspectives  Academic Article
• Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations  Academic Article
• Proteomic profiling reveals key cancer progression modulators in shed microvesicles released from isogenic human primary and metastatic colorectal cancer cell lines  Academic Article
• Proteomic resources: Integrating biomedical information in humans  Conference Paper
• Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein Signature  Academic Article
• Proteomics Profiling of Madin-Darby Canine Kidney Plasma Membranes Reveals Wnt-5a Involvement during Oncogenic H-Ras/TGF-β-mediated Epithelial-Mesenchymal Transition  Academic Article
• Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection  Academic Article
• Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function  Academic Article
• Proteomics-driven cancer biomarker discovery: looking to the future  Academic Article
• Proteomics: Applications Relevant to Transfusion Medicine  Academic Article
• Proteotranscriptomic measurements of E6-associated protein (E6AP) targets in DU145 prostate cancer cells  Academic Article
• Proteotypic peptides and their applications  Chapter
• Purification of Basolateral Integral Membrane Proteins by Cationic Colloidal Silica-Based Apical Membrane Subtraction  Academic Article
• Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain  Academic Article
• REDOX regulation of mitochondrial function in plants  Academic Article
• Recommendations for Biomarker Identification and Qualification in Clinical Proteomics  Academic Article
• Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles)  Academic Article
• Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)  Academic Article
• Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)  Academic Article
• Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)  Academic Article
• Regulation of the Raf–MEK–ERK pathway by protein phosphatase 5  Academic Article
• Repeated mild traumatic brain injuries induce persistent changes in plasma protein and magnetic resonance imaging biomarkers in the rat  Academic Article
• Restoration of full-length APC protein in SW480 colon cancer cells induces exosome-mediated secretion of DKK-4  Academic Article
• SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome  Academic Article
• Secreted primary human malignant mesothelioma exosome signature reflects oncogenic cargo  Academic Article
• Secretion of flagellin by the LEE-encoded type III secretion system of enteropathogenic Escherichia coli  Academic Article
• Secretome-Based Proteomic Profiling of Ras-Transformed MDCK Cells Reveals Extracellular Modulators of Epithelial-Mesenchymal Transition  Academic Article
• Semiquantitative Proteomics Enables Mapping of Murine Neutrophil Dynamics following Lethal Influenza Virus Infection  Academic Article
• Sex-specific transcriptional and proteomic signatures in schizophrenia  Academic Article
• Single Molecule Localization Microscopy of DNA Damage Response Pathways in Cancer.  Conference Paper
• Special Issue on Extracellular Vesicles and Exosomes  Editorial Article
• Statistical evaluation of labeled comparative profiling proteomics experiments using permutation test  Chapter
• Stem cell markers: Insights from membrane proteomics?  Academic Article
• Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus  Academic Article
• Structure of the tetrameric form of human L-Xylulose reductase: Probing the inhibitor-binding site with molecular modeling and site-directed mutagenesis  Academic Article
• Subcomplexes of ancestral respiratory complex i subunits rapidly turn over in vivo as productive assembly intermediates in arabidopsis  Academic Article
• Sulindac modulates secreted protein expression from LIM1215 colon carcinoma cells prior to apoptosis  Academic Article
• Surfaceome of exosomes secreted from the colorectal cancer cell line SW480: Peripheral and integral membrane proteins analyzed by proteolysis and TX114  Academic Article
• Tandem application of cationic colloidal silica and Triton X-114 for plasma membrane protein isolation and purification: Towards developing an MDCK protein database  Academic Article
• Targeting XIAP and PPARγ in granulosa cell tumors alters metabolic signaling  Academic Article
• The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard  Academic Article
• The Tree of Life: View from a Twig  Academic Article
• The proteomics of ageing  Academic Article
• Tissue microarray profiling in human heart failure  Academic Article
• Towards understanding epithelial–mesenchymal transition: A proteomics perspective  Academic Article
• Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing  Academic Article
• Two Distinct Populations of Exosomes Are Released from LIM1863 Colon Carcinoma Cell-derived Organoids  Academic Article
• Unassigned MS/MS spectra: Who Am I?  Chapter
• Understanding extracellular vesicle diversity – current status  Academic Article
• Urinary proteomic diagnosis of coronary artery disease: identification and clinical validation in 623 individuals  Academic Article