Proteomics
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A HUPO test sample study reveals common problems in mass spectrometry–based proteomics Academic Article
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A Multiple Protease Strategy to Optimise the Shotgun Proteomics of Mature Medicinal Cannabis Buds Academic Article
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A Transcriptomic and Proteomic Characterization of the Arabidopsis Mitochondrial Protein Import Apparatus and Its Response to Mitochondrial Dysfunction Academic Article
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A centrifugal ultrafiltration strategy for isolating the low-molecular weight (≤25K) component of human plasma proteome Academic Article
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A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda) Academic Article
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A common open representation of mass spectrometry data and its application to proteomics research Academic Article
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A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease Academic Article
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A novel ex vivo immunoproteomic approach characterising Fasciola hepatica tegumental antigens identified using immune antibody from resistant sheep Academic Article
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A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani Academic Article
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A proteomic approach for unraveling the oncogenic H-Ras protein networks in NIH/3T3 mouse embryonic fibroblast cells Academic Article
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A protocol for exosome isolation and characterization: evaluation of ultracentrifugation, density-gradient separation, and immunoaffinity capture methods. Chapter
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A protocol for isolation and proteomic characterization of distinct extracellular vesicle subtypes by sequential centrifugal ultrafiltration Chapter
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A protocol for the preparation of cryoprecipitate and cryo-depleted plasma for proteomic studies Chapter
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Accessory subunits are integral for assembly and function of human mitochondrial complex I Academic Article
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Advances in the development of human protein microarrays Academic Article
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An Accessible Proteogenomics Informatics Resource for Cancer Researchers Academic Article
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An Introduction to Proteome Bioinformatics Chapter
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An Isolated Complex V Inefficiency and Dysregulated Mitochondrial Function in Immortalized Lymphocytes from ME/CFS Patients Academic Article
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An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis Academic Article
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An updated secretome Academic Article
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Analysis of Ras-induced oncogenic transformation of NIH-3T3 cells using differential-display 2-DE proteomics Academic Article
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Ankyrin Repeat and Suppressors of Cytokine Signaling Box Protein Asb-9 Targets Creatine Kinase B for Degradation Academic Article
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Application of 2-D free-flow electrophoresis/RP-HPLC for proteomic analysis of human plasma depleted of multi high-abundance proteins Academic Article
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Approaches to functional genomics in filamentous fungi Academic Article
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Asparagus IRX9, IRX10, and IRX14A Are Components of an Active Xylan Backbone Synthase Complex that Forms in the Golgi Apparatus Academic Article
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Bovine milk-derived exosomes from colostrum are enriched with proteins implicated in immune response and growth Academic Article
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CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies Conference Paper
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CIDB: Chlamydia Interactive Database for cross-querying genomics, transcriptomics and proteomics data Academic Article
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Characterization of the low-molecular-weight human plasma peptidome Chapter
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Colon tumour secretopeptidome: Insights into endogenous proteolytic cleavage events in the colon tumour microenvironment Academic Article
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Colorectal cancer atlas: an integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues Academic Article
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Colorectal cancer cell line proteomes are representative of primary tumors and predict drug sensitivity Academic Article
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Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus Academic Article
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Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis Academic Article
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Comparative Proteomic Analysis of Slime from the Striped Pyjama Squid, Sepioloidea lineolata, and the Southern Bottletail Squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae) Academic Article
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Comparative proteome analysis of the strawberry-Fusarium oxysporum f. sp. fragariae pathosystem reveals early activation of defense responses as a crucial determinant of host resistance Academic Article
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Comparative proteomics evaluation of plasma exosome isolation techniques and assessment of the stability of exosomes in normal human blood plasma Academic Article
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Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes Academic Article
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Comprehensive proteomic analysis of human bile Academic Article
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Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process Academic Article
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Databases and informatics resources for analysis of plant mitochondria Chapter
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Deciphering the electric code of Geobacter sulfurreducens in cocultures with Pseudomonas aeruginosa via SWATH-MS proteomics Academic Article
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Detection and Mapping of Widespread Intermolecular Protein Disulfide Formation during Cardiac Oxidative Stress Using Proteomics with Diagonal Electrophoresis Academic Article
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Detection of cadherin-17 in human colon cancer LIM1215 cell secretome and tumour xenograft-derived interstitial fluid and plasma Academic Article
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Differential accumulation of soluble proteins in roots of metallicolous and nonmetallicolous populations of Agrostis capillaris L. exposed to Cu Academic Article
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Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics Academic Article
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EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data Academic Article
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Enhanced Analysis of the Mouse Plasma Proteome Using Cysteine-Containing Tryptic Glycopeptides Academic Article
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Enhanced growth of pilin-deficient Geobacter sulfurreducens mutants in carbon poor and electron donor limiting conditions Academic Article
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Enrichment of Human Platelet Membranes for Proteomic Analysis Academic Article
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Evaluation of Urine Proteome Pattern Analysis for Its Potential To Reflect Coronary Artery Atherosclerosis in Symptomatic Patients Academic Article
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Exosomes Derived from Human Primary and Metastatic Colorectal Cancer Cells Contribute to Functional Heterogeneity of Activated Fibroblasts by Reprogramming Their Proteome Academic Article
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Exosomes in bodily fluids are a highly stable resource of disease biomarkers Academic Article
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Exosomes: proteomic insights and diagnostic potential Academic Article
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Exploiting New Systems-Based Strategies to Elucidate Plant-Bacterial Interactions in the Rhizosphere Academic Article
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Exploring the Fasciola hepatica tegument proteome Academic Article
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Extracellular vesicles secreted by Saccharomyces cerevisiae are involved in cell wall remodelling Academic Article
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Finding the keys to the CAR: Identifying novel target antigens for t cell redirection immunotherapies Academic Article
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From genome to proteome--aim of human proteomics Academic Article
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FunRich: An open access standalone functional enrichment and interaction network analysis tool Academic Article
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Fungal extracellular vesicles with a focus on proteomic analysis Academic Article
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Gene ontology-based analysis of zebrafish omics data using the web tool Comparative Gene Ontology Academic Article
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Genetic variation among lambs in peripheral IgE activity against the larval stages ofTeladorsagia circumcincta Academic Article
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Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry Academic Article
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Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1 Academic Article
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Guidelines for the next 10 years of proteomics Academic Article
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Helicobacter pylori Growth Stage Determines the Size, Protein Composition, and Preferential Cargo Packaging of Outer Membrane Vesicles Academic Article
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Histopathological effect and stress response of mantle proteome following TBT exposure in the Hooded oyster Saccostrea cucullata Academic Article
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Human Microglial Cells Synthesize Albumin in Brain Academic Article
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Human Protein Reference Database--2009 update Academic Article
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Human Proteinpedia as a Resource for Clinical Proteomics Academic Article
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Human Proteinpedia enables sharing of human protein data Academic Article
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Human Proteinpedia: a unified discovery resource for proteomics research Academic Article
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Human protein reference database--2006 update Academic Article
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Identification and validation of novel candidate protein biomarkers for the detection of human gastric cancer Academic Article
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Identification of a Wnt-induced protein complex by affinity proteomics using an antibody that recognizes a sub-population of β-catenin Academic Article
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Identification of intra- and intermolecular disulphide bonding in the plant mitochondrial proteome by diagonal gel electrophoresis Academic Article
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Identification of mammalian mitochondrial proteins that interact with IAPs via N-terminal IAP binding motifs Academic Article
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Implementation of proteomic biomarkers: making it work Academic Article
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Increased Abundance of Proteins Involved in Phytosiderophore Production in Boron-Tolerant Barley Academic Article
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Increased collagen within the transverse tubules in human heart failure Academic Article
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Inhibition of cathepsin proteases attenuates migration and sensitizes aggressive N-Myc amplified human neuroblastoma cells to doxorubicin Academic Article
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Insights into the Immunological Properties of Intrinsically Disordered Malaria Proteins Using Proteome Scale Predictions Academic Article
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Insulin mediated activation of PI3K/Akt signalling pathway modifies the proteomic cargo of extracellular vesicles Academic Article
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Integrated comparison of GWAS, transcriptome, and proteomics studies highlights similarities in the biological basis of animal and human myopia Academic Article
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Integrated multi-omics framework of the plant response to jasmonic acid Academic Article
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Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.) Academic Article
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Is a gene-centric human proteome project the best way for proteomics to serve biology? Academic Article
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Isolation of extracellular membranous vesicles for proteomic analysis Chapter
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Knockdown of stem cell regulator Oct4A in ovarian cancer reveals cellular reprogramming associated with key regulators of cytoskeleton-extracellular matrix remodelling Academic Article
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Label-based and label-free strategies for protein quantitation Chapter
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Large oncosomes contain distinct protein cargo and represent a separate functional class of tumor-derived extracellular vesicles Academic Article
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Lipoic Acid-Dependent Oxidative Catabolism of α-Keto Acids in Mitochondria Provides Evidence for Branched-Chain Amino Acid Catabolism in Arabidopsis Academic Article
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Liquid-based free-flow electrophoresis–reversed-phase HPLC: a proteomic tool Academic Article
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Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature Academic Article
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MALDI-TOF mass spectrometry proteomic based identification of clinical bacterial isolates Academic Article
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Macromolecular composition of phloem exudate from white lupin (Lupinus albus L.) Academic Article
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Metabolic classification of microbial genomes using functional probes Academic Article
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Molecular profiling of cetuximab and bevacizumab treatment of colorectal tumours reveals perturbations in metabolic and hypoxic response pathways Academic Article
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Multi-omic data analysis using Galaxy Academic Article
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N-terminal isotope tagging with propionic anhydride: Proteomic analysis of myogenic differentiation of C2C12 cells Academic Article
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Naturally Occurring Human Urinary Peptides for Use in Diagnosis of Chronic Kidney Disease Academic Article
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Network tools for the analysis of proteomic data Chapter
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Oncogenic epithelial cell-derived exosomes containing Rac1 and PAK2 induce angiogenesis in recipient endothelial cells Academic Article
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Online quantitative proteomics p -value calculator for permutation-based statistical testing of peptide ratios Academic Article
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Optimisation of Milk Protein Top-Down Sequencing Using In-Source Collision-Induced Dissociation in the Maxis Quadrupole Time-of-Flight Mass Spectrometer Academic Article
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Optimisation of protein extraction from medicinal Cannabis mature buds for bottom-up proteomics Academic Article
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Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database Academic Article
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Plant glycosylphosphatidylinositol anchored proteins at the plasma membrane-cell wall nexus Academic Article
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Plasma Proteome Database as a resource for proteomics research Academic Article
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Plasma Proteome Database as a resource for proteomics research: 2014 update Academic Article
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Plasma proteomic analysis in obese and overweight prepubertal children Academic Article
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Post-Genomic Approaches to Understanding Malaria Parasite Biology: Linking Genes to Biological Functions Academic Article
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Post-translational and transcriptional dynamics–regulating extracellular vesicle biology Academic Article
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Prediction of acute coronary syndromes by urinary proteome analysis Academic Article
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Preliminary validation of a high docosahexaenoic acid (DHA) and -linolenic acid (ALA) dietary oil blend: Tissue fatty acid composition and liver proteome response in Atlantic Salmon (Salmo salar) smolts Academic Article
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Protein systems biology: Method, regulation, and networks Academic Article
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Proteogenomic Analysis Identifies a Novel Human SHANK3 Isoform Academic Article
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Proteogenomic Analysis of the Venturia pirina (Pear Scab Fungus) Secretome Reveals Potential Effectors Academic Article
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Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry Academic Article
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Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes Academic Article
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Proteomic Insights into Endometrial Receptivity and Embryo‐Endometrial Epithelium Interaction for Implantation Reveal Critical Determinants of Fertility Academic Article
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Proteomic Profiling of the Epithelial-Mesenchymal Transition Using 2D DIGE Chapter
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Proteomic analysis of colorectal cancer: discovering novel biomarkers Academic Article
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Proteomic and Carbonylation Profile Analysis at the Critical Node of Seed Ageing in Oryza sativa Academic Article
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Proteomic and Metabolic Profiling of Rice Suspension Culture Cells as a Model to Study Abscisic Acid Signaling Response Pathways in Plants Academic Article
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Proteomic and Post‐Translational Modification Profiling of Exosome‐Mimetic Nanovesicles Compared to Exosomes Academic Article
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Proteomic changes during intestinal cell maturation in vivo Academic Article
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Proteomic comparison of 3D and 2D glioma models reveals increased HLA-E expression in 3D models is associated with resistance to NK cell-mediated cytotoxicity Academic Article
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Proteomic data storage and sharing Chapter
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Proteomic identification of galectin-11 and -14 ligands from Fasciola hepatica Academic Article
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Proteomic identification of interferon-induced proteins with tetratricopeptide repeats as markers of M1 macrophage polarization Academic Article
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Proteomic insights into extracellular vesicle biology - defining exosomes and shed microvesicles Academic Article
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Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field Academic Article
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Proteomic profiling of exosomes secreted by breast cancer cells with varying metastatic potential Academic Article
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Proteomic profiling of exosomes: Current perspectives Academic Article
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Proteomic profiling of secretome and adherent plasma membranes from distinct mammary epithelial cell subpopulations Academic Article
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Proteomic profiling reveals key cancer progression modulators in shed microvesicles released from isogenic human primary and metastatic colorectal cancer cell lines Academic Article
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Proteomic resources: Integrating biomedical information in humans Conference Paper
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Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein Signature Academic Article
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Proteomics Profiling of Madin-Darby Canine Kidney Plasma Membranes Reveals Wnt-5a Involvement during Oncogenic H-Ras/TGF-β-mediated Epithelial-Mesenchymal Transition Academic Article
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Proteomics informed by transcriptomics for characterising differential cellular susceptibility to Nelson Bay orthoreovirus infection Academic Article
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Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function Academic Article
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Proteomics-driven cancer biomarker discovery: looking to the future Academic Article
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Proteomics: Applications Relevant to Transfusion Medicine Academic Article
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Proteotranscriptomic measurements of E6-associated protein (E6AP) targets in DU145 prostate cancer cells Academic Article
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Proteotypic peptides and their applications Chapter
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Purification of Basolateral Integral Membrane Proteins by Cationic Colloidal Silica-Based Apical Membrane Subtraction Academic Article
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Quantitative proteomic profiling reveals novel region-specific markers in the adult mouse brain Academic Article
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REDOX regulation of mitochondrial function in plants Academic Article
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Recommendations for Biomarker Identification and Qualification in Clinical Proteomics Academic Article
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Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles) Academic Article
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Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles) Academic Article
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Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles) Academic Article
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Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles) Academic Article
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Regulation of the Raf–MEK–ERK pathway by protein phosphatase 5 Academic Article
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Repeated mild traumatic brain injuries induce persistent changes in plasma protein and magnetic resonance imaging biomarkers in the rat Academic Article
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Restoration of full-length APC protein in SW480 colon cancer cells induces exosome-mediated secretion of DKK-4 Academic Article
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SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome Academic Article
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Secreted primary human malignant mesothelioma exosome signature reflects oncogenic cargo Academic Article
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Secretion of flagellin by the LEE-encoded type III secretion system of enteropathogenic Escherichia coli Academic Article
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Secretome-Based Proteomic Profiling of Ras-Transformed MDCK Cells Reveals Extracellular Modulators of Epithelial-Mesenchymal Transition Academic Article
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Semiquantitative Proteomics Enables Mapping of Murine Neutrophil Dynamics following Lethal Influenza Virus Infection Academic Article
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Sex-specific transcriptional and proteomic signatures in schizophrenia Academic Article
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Single Molecule Localization Microscopy of DNA Damage Response Pathways in Cancer. Conference Paper
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Special Issue on Extracellular Vesicles and Exosomes Editorial Article
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Statistical evaluation of labeled comparative profiling proteomics experiments using permutation test Chapter
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Stem cell markers: Insights from membrane proteomics? Academic Article
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Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus Academic Article
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Structure of the tetrameric form of human L-Xylulose reductase: Probing the inhibitor-binding site with molecular modeling and site-directed mutagenesis Academic Article
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Subcomplexes of ancestral respiratory complex i subunits rapidly turn over in vivo as productive assembly intermediates in arabidopsis Academic Article
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Sulindac modulates secreted protein expression from LIM1215 colon carcinoma cells prior to apoptosis Academic Article
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Surfaceome of exosomes secreted from the colorectal cancer cell line SW480: Peripheral and integral membrane proteins analyzed by proteolysis and TX114 Academic Article
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Tandem application of cationic colloidal silica and Triton X-114 for plasma membrane protein isolation and purification: Towards developing an MDCK protein database Academic Article
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Targeting XIAP and PPARγ in granulosa cell tumors alters metabolic signaling Academic Article
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The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard Academic Article
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The Tree of Life: View from a Twig Academic Article
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The proteomics of ageing Academic Article
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Tissue microarray profiling in human heart failure Academic Article
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Towards understanding epithelial–mesenchymal transition: A proteomics perspective Academic Article
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Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing Academic Article
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Two Distinct Populations of Exosomes Are Released from LIM1863 Colon Carcinoma Cell-derived Organoids Academic Article
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Unassigned MS/MS spectra: Who Am I? Chapter
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Understanding extracellular vesicle diversity – current status Academic Article
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Urinary proteomic diagnosis of coronary artery disease: identification and clinical validation in 623 individuals Academic Article